Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01558 ATGATCAACGGAGACGGGACTTGTGAGGGTTTCTCGGAAGCTGCCTCTGCGGATCCGTTGAATTCGTCGTCACCTTGGGGTATCCAGAATGTCGATGGTAGCTCTGTTGCTTCACCGGCTTCTTCGAGGTATTCGTCCTGCGGAGAATCCGAGTTCGAGAGGTATTGCAGCGCGAATTCGGCAATGGGAACGCCAAGTATGCGTAGCACAATTACAGTATTTAACGACTGCACCGATTCTGAATTTGGGTATGCGAGGAACTTTGGGTTCAGTGATGATGGCGGCCTGGAGAACTTCAGTTTGGGAGGGAGTGAGAGGAATTCGCTGGATACGAATATAGTAGCCTATAGAAAGATAGAACTGCGTGATGAAGTTACTAGTGAAGAGCCGAGTACGAAGTATAGGTCTAGTGGGTTGAATTTGTATGGAACGGGTGAGCTTATTGATTCACTTGAAGCTAATGGCGAAGTTTTGTGTTGGAAGCTTGAGAGAACATCGGATTTATTATGTGGCGTAGATATGACTAATCAATTGGAGAAGGGCGAGGGCAGCAAAGATGAAAAAGAAGGCTTCATTATAGAGAAAGAAGCCAGTGAATTGGGAACGGAGGTGGATGCTGTTCTTGGAGAAGTAACCAACGAAGCAGTTCATGTGGGCTGTTTAGAAGGAAATACGGTTGAGAATGGCATGAAATCAGGGCAAAGGTTTCAAGAATGTTTTCTACCTTGCAGGGTCGAGAAAGAGTCTGACGGTGAATTGGATATGGAAGATGATAGATCCCAGAATGAGTATTCAGAGAGTGAGGATTCAATATATAATTTTTTATCTGATGGTAATCATAAGGATGAAACTTTCCAGCATATTAATGCACGCTTTCTCCCAGAACCTCACTCGGCGAATGAAAATCCATTGCTTATCAATTCATCTGTAGCTTTTGGTTCCGATGATTGGAATGATTTTGAGTGTGAAACTCAGGGATTCTCTCTGAATTCCTTGACTGAGGACGCACTCCAGGAAAGGAAAAAGCACAATCTGAATTCCGGTTCTCTGAATGTAAATGGTGATCCCATTGGTAATGAAATGACGAGAAAAAATGGGACACAGGTGCTCTTAGACTGCAAAAAAGATCAAGCAAGCACAAATTTCCCAAAGAAAGTTAACAGTAGTTATGAGGATTGTATCATTGTTCCAACTGTTGAAAGACCACAGGAAATGATTCAAGTGCGGGACATTCCTGTGGCCATCTGCCAAGTCCAGTCTATTGACGAGTTGGAGGAAATTGCAAACAGTACTTTTTTAACTGAAGCTGATTCCTCATATGGTCTTGAGTTAGATCAAGATGCGAAGGATATATTTGTTGTTAATAATCAAGCAGGAGATGATGATAAAACTGCATATAATAGTAAATGTCTTGTTAGTAATGTTACTGAAATTGGTACTGGAGCAGAGAAATTTACGTTGAAGCAGCACATGTGCGCAGTGGATGGTAACTGCATAGAGCAACCTCAAATTCCAGAAACTGAGGATAACAGTGGAATTGACTCTCTTGGTGATATTTTAACCAATCGACTTTCTACTCATGATGGTGACTGTTGTGAGGAAATGTCACATTCCACTTTAATACCTGAATCAAAGGGTCATCTTTTGCCAGTTGAGTTAGCAAAACTTGAGCTAAATGATTTCTATGATGAAGTTGTTCATGAAATGGAGGAAATACTGCTTGAATCTTCTGATTCTCCAGGGGCTAGATTTACTAATAGATATAAGTTATCTCAGTCACTTCCATCTTTACCATTAAGAGATGGAGGATCAACTGCATCTATTTCAGGCATTAACTGTTCTGATCCAAATAACCCAGAAAACTTTATAATTGATGGGGTTGAAGTGATAGGGGCAAGACAAAAGAGAGGGGATGTATCATTCAGTGAACGACTAGTTGGGGTGAAGGAGTACACTGTATACAAAATTAGAGTATGGAGTGGCAAGAAACAGTGGGAGGTTGAACGCCGCTACCGAGATTTCTATTCTCTATATTGTCAGTTGAAATCATCATTTGCTGATCGTGGCTGGAGTTTACCCTCTCCCTGGTCCTCTGTTGATAATAGATCAAGAAAGTTATTTGGGAGTGCATCTCCGGATATTGTTGCTGAAAGAAGTGTTTTAATTCAAGAGTGCTTATGTTCTATTCTTGGTTCAAGATTTTCATCAACAAATCCAAGTCCATTAATTTGGTTTTTGTCCTCTCAAGAATCGAACTCCAGTTCTCCTACATCAGATACTGTATTGCCTCAATCACCTGCCATTTCAAGTGCGTCTGACACACAAAAATTGTCCTCTTTGGGGAATTCCATATCATTAATTGTTGAAATTCGACCATACAAATCTACAAAACAAATACTGGAGCTGCAGCATTATACATGTGCTGGATGTTACAGACATTTTGATGATCAGAAAACTCTGATGAAAGGCTTTGTACAGAGTTTTGGATGGGGCAAACCACGACTCTGTGATTACACCTCTCAGATGTTTTGTTCTTCATGCCATACAAATGAGATGGCAGTCATACCAGCAAGAGTTTTACATCATTGGGACTTCACTCGCTACCCAGTTTCTCAGTTAGCTAAGTCGTATTTGGATTCCATACATGATCAGCCCATGCTTTGTGTGAGTGCGGTTAATCCTTCTCTCTTCTCGAAGGTCCCAGCTTTGCTTCATGTTATGGGCGTGAGGAAAAAAATAGGAGATATGATTTCATATGTTCGCTGCCCATTTCGTAGGTCAATTAACAGAGGACTTGGATTCCGTAGATATCTTGTTGAAAGCAATGATTTTTTTGCTCTCAGAGATCTTGTTGATCTTTCCAAAGGGGCATTTGCAGTATTACCTACAATCCTGGAAACCGTCTCGAGGAAAATCTTGGAGCACATAGAGGAGAAATGCCTTGTGTGCTGTGATGCTGGTGTTTCATGTGGTGCTCGACAAGCATGTAGCGCCCCATTGTCTCTCATTTTTCCTTTCCAGGAAACTGAGATGGAGAGATGTCCATCATGTGAATCTCTGTTCCATAAACCTTGTTTTGCAAAGCTCACCAAATGCCATTGTGGGGCAAGCCTTAGAGTTGATGAGACCAGAAGGCTCTCAAGGAAGGTAGGCCATGGATTAGGGACAGATAATGAGGAGAATGGCGCTGTGTACTCATTTTTGGGAAAATCATCTTCCATTTCGCCTTTGAGATCTCTATCAGGCCTATTTGCAAAATCAAATCAAACAACAAAAGAACATAAAGACAGCGAGAATATCATCTTGATGGGTTCTCTGCCTACCGGCTCCCTTTGA 3336 41.52 MINGDGTCEGFSEAASADPLNSSSPWGIQNVDGSSVASPASSRYSSCGESEFERYCSANSAMGTPSMRSTITVFNDCTDSEFGYARNFGFSDDGGLENFSLGGSERNSLDTNIVAYRKIELRDEVTSEEPSTKYRSSGLNLYGTGELIDSLEANGEVLCWKLERTSDLLCGVDMTNQLEKGEGSKDEKEGFIIEKEASELGTEVDAVLGEVTNEAVHVGCLEGNTVENGMKSGQRFQECFLPCRVEKESDGELDMEDDRSQNEYSESEDSIYNFLSDGNHKDETFQHINARFLPEPHSANENPLLINSSVAFGSDDWNDFECETQGFSLNSLTEDALQERKKHNLNSGSLNVNGDPIGNEMTRKNGTQVLLDCKKDQASTNFPKKVNSSYEDCIIVPTVERPQEMIQVRDIPVAICQVQSIDELEEIANSTFLTEADSSYGLELDQDAKDIFVVNNQAGDDDKTAYNSKCLVSNVTEIGTGAEKFTLKQHMCAVDGNCIEQPQIPETEDNSGIDSLGDILTNRLSTHDGDCCEEMSHSTLIPESKGHLLPVELAKLELNDFYDEVVHEMEEILLESSDSPGARFTNRYKLSQSLPSLPLRDGGSTASISGINCSDPNNPENFIIDGVEVIGARQKRGDVSFSERLVGVKEYTVYKIRVWSGKKQWEVERRYRDFYSLYCQLKSSFADRGWSLPSPWSSVDNRSRKLFGSASPDIVAERSVLIQECLCSILGSRFSSTNPSPLIWFLSSQESNSSSPTSDTVLPQSPAISSASDTQKLSSLGNSISLIVEIRPYKSTKQILELQHYTCAGCYRHFDDQKTLMKGFVQSFGWGKPRLCDYTSQMFCSSCHTNEMAVIPARVLHHWDFTRYPVSQLAKSYLDSIHDQPMLCVSAVNPSLFSKVPALLHVMGVRKKIGDMISYVRCPFRRSINRGLGFRRYLVESNDFFALRDLVDLSKGAFAVLPTILETVSRKILEHIEEKCLVCCDAGVSCGARQACSAPLSLIFPFQETEMERCPSCESLFHKPCFAKLTKCHCGASLRVDETRRLSRKVGHGLGTDNEENGAVYSFLGKSSSISPLRSLSGLFAKSNQTTKEHKDSENIILMGSLPTGSL 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26000569 26006842 - Lsi06G015580.1 Lsi06g01558 666288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01558 1111 SUPERFAMILY PX domain 644 751 IPR036871 GO:0035091
Lsi06g01558 1111 Pfam Putative zinc-RING and/or ribbon 834 1036 IPR025258 -
Lsi06g01558 1111 Gene3D - 640 753 IPR036871 GO:0035091
Lsi06g01558 1111 PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN 62 1110 - -
Lsi06g01558 1111 Pfam PX domain 658 748 IPR001683 GO:0035091
Lsi06g01558 1111 PANTHER DIFFERENTIALLY EXPRESSED IN FDCP 8 HOMOLOG 62 1110 - -
Lsi06g01558 1111 CDD PX_domain 639 730 - -
Lsi06g01558 1111 ProSiteProfiles PX domain profile. 632 753 IPR001683 GO:0035091
Lsi06g01558 1111 SMART DUF4206_2 834 1041 IPR025258 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01558 - - - bhj:120070994 2016.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g766 . . Bda06g00607 . . . . Bma12g01042 . . Cma10g00122 Cma11g00092 Car10g00110 Car11g00084 . . Cpe04g01562 Bhi02g00454 Tan09g2254 . . . . . Cla06g01666 Cam06g1851 Cec06g1903 Cco06g1908 Clacu06g1810 Cmu06g1751 Cre06g2570 Cone2ag0913 Cone16ag0095 . . . . . . . Blo15g00264 . . Bpe07g00845 . . . . Cmo10g00126 Cmo11g00091 . . . . . Cpe18g00847 . . . . . . . . . . . . . . Lsi06g01558 Csa01g00145 Chy02g02584 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006562 2 2 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01558 Lsi_Chr06 FPKM 5.529093 6.102399 3.303407 3.202331 5.796327 5.689164 6.279873 6.355206 5.79495 6.28019