Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01561 ATGGCTCACAGTCACAGTACCACTACCACAGCCTACGCCCTACCCCTCTCTCTCTCTACGCGCCTAAATAATTCTTCCATTTTTCTCTCTCCGCCGTCAACCATGGCGGATCTTTACGGACTCCATCCCCTCGACGGTAACTCTTACCGGTCATCTTCAGCGACGACTTTGGATAGCCTTTCCCTTCCTGCTAATTCTCCGATGGCTTCTGCCTATTATTCTCATCTACTTCCGGGTTTTGCATCGGAACATTTTCGGCCGGTTTCGTCGGCGGCCTGCGACACAGCTGTGGTGGAGGCTGAGATTGCAACAGCGCGTACTAATTCCGAGGAGGAGTCTGCCGGTGTAATTAGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAGCTTGTCGATGCGTTTGTGAACTGTCAAAAGGTCGGTGTATCGCCGGAATTCGCTAATATTCTAGACCAAAACAACCAGGGAAGTGACATCGGCAAAGAAACTTCCGGCGTTTCAACTAGCTTTGGTGCCGATCCCGAACTCGATAAGTTCATGGGAACATACTACGGGATACTGGCCAAATACGAGTTGGATCTATCCCAGTCCTTCGTGGAAGCATCTTCCTTTCTCAACAACATGGAAATGCAGTTAAACATGCTTTGTAACGGAACTACCAGAAGCTACGTTTCCGATGAAGCTGCTTCGGAAGAGGATATAAGCGCCGGAGAAGTAGAACTGCAAGACTCTCTTCTGGTTCCAGGAAATGAAGATCGTAAGCTGAAGGATCAACTCCTACGTAAGTATGGTGGTCGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACTAAAAAGAAGGAAAATCTACCGAGAGAAGCCAGACAGATCCTGTTTGACTGGTGGAACAGCCATTCCCAATGGCCTTATCCCACTGACAGGCAACGCGTTGCTATGACTGTAAGCAACGATTCGTTATGCGCTCCTCTTAAATGGAAGTTCTCTCAGGAACAGAGGAGAGCTCTATGTGAATCAGTTGCTTTCGATCGTTCTCTGTATGATACTGATTTTTTAGGAATTGCCGAAACAATACTCAAATTTTCCTCTGTTGTAGTTGATATCATATCGGCAATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGATCGAGGTGGTCGTGTTATTATATTTGAGAGAAAGGACGAGAAGGATACTTCAAAATACTACCCTACACGGAATAAGTTGGAAAAGTTGAATCTTACTCCTGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCACGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAATAAAGTGGTGTGTATCGCCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAAGTGAAAGCTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGAAATCAGTTTCACTAGTGAACAAGAAAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAGTATGGCAATGAACAAGGTAGCCTCTAAAGACATTCATGACATGATTGCTGATCAAGACAACACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCATGATTATAATATTAACTCCATTTCTAACAATAGTGATGGCGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATAATAACGTCGGCTGAATTCCATCCTCTGCACTGCAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTGTTACGAACTGAAGAACTGAATCGACCAAAATCATTTTTTACGGAGATAATTTCATCCATGTCAGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAACTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCAGTTGCAGTTTTCAAGATCCACGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGATGGGCTTCACTTTGCAACTGGATCCTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCGGAAGGTATCACTACAGAAGCGGGAAAGATTCCTGATAGAAAACCACATCTCCAAACCACTCGACGGGCAAGAAGGTCGTCTTTAAGCAATTTGACGCGTGATTTTTTTCGGCATGGCAGTGAACATTCAAGCTCAGACAATAATGAAGCTTCTATTGACTTGAACTCCAAGTTGCTACATTTAGCGTGGCACCCATCGGAAAATTTAATTGCATGTGCTGCTGGAAGTGGCATGTTCATCTATTATGCATAA 2532 43.01 MAHSHSTTTTAYALPLSLSTRLNNSSIFLSPPSTMADLYGLHPLDGNSYRSSSATTLDSLSLPANSPMASAYYSHLLPGFASEHFRPVSSAACDTAVVEAEIATARTNSEEESAGVIRAKIASHPLYPKLVDAFVNCQKVGVSPEFANILDQNNQGSDIGKETSGVSTSFGADPELDKFMGTYYGILAKYELDLSQSFVEASSFLNNMEMQLNMLCNGTTRSYVSDEAASEEDISAGEVELQDSLLVPGNEDRKLKDQLLRKYGGRHISSLKQEFSKTKKKENLPREARQILFDWWNSHSQWPYPTDRQRVAMTVSNDSLCAPLKWKFSQEQRRALCESVAFDRSLYDTDFLGIAETILKFSSVVVDIISAIGFDKTGDNLAIGDRGGRVIIFERKDEKDTSKYYPTRNKLEKLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNDKTIKLWKVKEHKVKAVKEMNPNRFVSSENALLAEISFTSEQEKVSLSNGCHWNLSESMAMNKVASKDIHDMIADQDNTSRRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLRTEELNRPKSFFTEIISSMSDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGSYSNQLRMFSYGSGSSEGITTEAGKIPDRKPHLQTTRRARRSSLSNLTRDFFRHGSEHSSSDNNEASIDLNSKLLHLAWHPSENLIACAAGSGMFIYYA 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26015326 26030144 + Lsi06G015610.1 Lsi06g01561 666291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01561 843 Pfam KNOX2 domain 170 216 IPR005541 GO:0003677|GO:0005634
Lsi06g01561 843 MobiDBLite consensus disorder prediction 764 785 - -
Lsi06g01561 843 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 485 IPR001680 GO:0005515
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 560 587 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 812 841 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 373 393 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 616 644 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 452 480 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 673 700 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 588 615 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 701 726 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 645 672 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 727 753 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 321 843 IPR000009 GO:0000159|GO:0019888
Lsi06g01561 843 SMART WD40_4 436 476 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 549 588 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 592 639 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 355 394 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 723 754 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 805 843 IPR001680 GO:0005515
Lsi06g01561 843 SMART WD40_4 658 696 IPR001680 GO:0005515
Lsi06g01561 843 Pfam KNOX1 domain 117 155 IPR005540 GO:0003677|GO:0005634
Lsi06g01561 843 PANTHER OS02G0617600 PROTEIN 321 843 - -
Lsi06g01561 843 Gene3D - 401 646 IPR015943 GO:0005515
Lsi06g01561 843 SMART ELK_2 254 276 IPR005539 GO:0003677
Lsi06g01561 843 SMART KNOX1_2 115 156 IPR005540 GO:0003677|GO:0005634
Lsi06g01561 843 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Lsi06g01561 843 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 436 450 IPR018067 -
Lsi06g01561 843 Gene3D - 647 840 IPR015943 GO:0005515
Lsi06g01561 843 Pfam ELK domain 255 276 IPR005539 GO:0003677
Lsi06g01561 843 Gene3D - 259 318 - -
Lsi06g01561 843 SUPERFAMILY WD40 repeat-like 363 841 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01561 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - csv:101206601 908.672
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02949 Lsi-Chr2:35640066 Lsi06g01561 Lsi-Chr6:26015326 3.02E-44 dispersed
Lsi02g02950 Lsi-Chr2:35645366 Lsi06g01561 Lsi-Chr6:26015326 5.19E-93 dispersed
Lsi06g01561 Lsi-Chr6:26015326 Lsi07g00561 Lsi-Chr7:5934562 2.80E-160 dispersed
Lsi08g01662 Lsi-Chr8:24387597 Lsi06g01561 Lsi-Chr6:26015326 2.91E-20 dispersed
Lsi02g00002 Lsi-Chr2:7024 Lsi06g01561 Lsi-Chr6:26015326 5.82E-11 transposed
Lsi04g00565 Lsi-Chr4:5168784 Lsi06g01561 Lsi-Chr6:26015326 5.06E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g773 . . . Bda15g00550 . . . . . . . . . Car11g00082 . . Cpe04g01564 . . . . . . . Cla06g01668 Cam06g1854 . . . Cmu06g1753 . . . . . . . . . . . . . . . . Bma08g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01561 Csa01g00143 . Cme02g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01561 Lsi_Chr06 FPKM 76.528641 74.731865 47.989395 46.288414 25.079195 22.548803 25.124043 30.855766 32.918682 34.673809