Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01566 ATGATGGGTATCGAAATTTGTGGAAGAATAGACAAAGTAAATGGAAAAGAACTGAGTTATAAGGAATTTGTAGAACGATACATGGAGAAGAACCAACCTGTGGTGTTGACAGGTCTCATGGATGATTGGAAGGCTTGCAGCGATTGGGTCGACGAGAATGGGGAGGCAAATCTAGGGTTCTTTTCCACCCATTTCGGGAAATCCAGGGTACAGGTTGCAGATTGCAGTACTAGAGAATTTACAGATCAGAAGAGAGTAGAAATGTCTGTTTCAGAGTTCATTGATCAATGGTGTAAGGAGCCTATACAGGAGCATGGCCTTACCTCAAACAACGGACTTACAGACAAGTCTGTACTATACTTGAAGGACTGGCATTTTGTGAAGGAATATCCAAATTATACAGCATACTCAACTCCACACTTTGTTTGTGATGACTGGCTCAACCTATACCTTGACAGTTACCGTATGCACAGGGATCCTGACTCTTACCAAGAGAAAGATGAAATATGTTGCTCTGACTATCGTTTCGTTTACATGGGAGCAAAAGGTTCTTGGACTCCACTTCATGCCGACGTATTCAGGTCATACAGCTGGAATATGAAGGCCTGTATATATAGTATCTTTGATGATATAAGTGAAAATTTGTTTCCTGGTTTTAAGAAGGCTACCTGGTTGGATTGTACTCAAGAACAGAATGAAATTATATTTGTGCCAAGTGGCTGGTATCATCAAGTTCATAATCTGGATGACACTGTATCAATAAACCACAATTGGTTTAACTCCTACAACCTCTGTTGGGTGTTGGACTTGATGTTGCGGGACTACAACGAAGCTAAGGAGTACATAGAAGACATTAGAGATATCTGTGATGATTTTGAAGGTCTCTGTCAGCGCAACCTCGCGGCTAACACAGGCATGAACTTCTATGATTTCTTCATCTTTTTAGCACGCTTTTCGCTCGCCAATTTGGTGGTACTTGACACTCTAGCAAGAGACGCTGAAAATGTTGCTGGGAGCTTATCTCCAATGGTTCAACAGTTGGCTCAGAATCTTGCTTCAATACAGAGGATTGCCTTGAAAATGAAATTCTTGGAATGTTTTTCAGAAGACCAAGGATTCATGTTGGATCTAGGAGAAACACACAAAGATCCCAAGTTTTCTAAACTCTGTTACTCTTTAATTCAAACTTGTGGGTCCATACACAAACAACAGATTTCGAGCTTTTGCCCAAAGACAATCGCAACACATGATTCTAGGACTTCAATTATCATTCAAAATTTTTGTGATGGTGTTTCGTCGCCCAAAGATCTGGTCAAATTTATCGACACGGTCTTAACCAAACATACAAACTTAGAATCACCAGAATGA 1368 40.42 MMGIEICGRIDKVNGKELSYKEFVERYMEKNQPVVLTGLMDDWKACSDWVDENGEANLGFFSTHFGKSRVQVADCSTREFTDQKRVEMSVSEFIDQWCKEPIQEHGLTSNNGLTDKSVLYLKDWHFVKEYPNYTAYSTPHFVCDDWLNLYLDSYRMHRDPDSYQEKDEICCSDYRFVYMGAKGSWTPLHADVFRSYSWNMKACIYSIFDDISENLFPGFKKATWLDCTQEQNEIIFVPSGWYHQVHNLDDTVSINHNWFNSYNLCWVLDLMLRDYNEAKEYIEDIRDICDDFEGLCQRNLAANTGMNFYDFFIFLARFSLANLVVLDTLARDAENVAGSLSPMVQQLAQNLASIQRIALKMKFLECFSEDQGFMLDLGETHKDPKFSKLCYSLIQTCGSIHKQQISSFCPKTIATHDSRTSIIIQNFCDGVSSPKDLVKFIDTVLTKHTNLESPE 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26112860 26118772 - Lsi06G015660.1 Lsi06g01566 666296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01566 455 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 448 - -
Lsi06g01566 455 SMART cupin_9 145 273 IPR003347 -
Lsi06g01566 455 Gene3D Cupin 3 260 - -
Lsi06g01566 455 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 448 - -
Lsi06g01566 455 Pfam JmjC domain, hydroxylase 225 258 IPR003347 -
Lsi06g01566 455 SUPERFAMILY Clavaminate synthase-like 10 287 - -
Lsi06g01566 455 ProSiteProfiles JmjC domain profile. 89 275 IPR003347 -
Lsi06g01566 455 Pfam Cupin-like domain 22 193 IPR041667 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01566 - - - csv:101207085 864.374
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01566 Lsi-Chr6:26112860 Lsi08g00977 Lsi-Chr8:18242577 3.04E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g790 . . Bda06g00609 . . . . Bma12g01045 . . Cma10g00114 . Car10g00104 . Sed08g0098 . . Bhi02g00483 Tan09g2279 Cmetu02g0880 . Hepe09g0216 . . Cla06g01677 Cam06g1865 Cec06g1914 Cco06g1919 Clacu06g1820 Cmu06g1762 Cre06g2579 . . . Cone19ag0154 . . . . . Blo15g00261 . . Bpe07g00850 . . . . Cmo10g00119 . . . . . . Cpe18g00851 . . . . . . . . . . . . . . Lsi06g01566 Csa01g00132 Chy02g02595 Cme02g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009835 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25553 PF13621 Cupin_8 5.70E-09 CL0029 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01566 Lsi_Chr06 FPKM 9.671795 8.05393 0.703712 0.645067 22.935158 21.655664 17.515301 3.12544 2.139909 1.737498