Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01567 ATGACAGACCCAACAGGTTTAACGGCTTCTGATAAGGGCCAGGAACCCTCTTCGTCATCGGACCAGAAAAGTACTACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCAAATCGCTTAGTTGTTGATGAGGCTATAAATGACGATAACTCTGTGGTTTCTTTGCATCCTGCTACCATGGAAAAGCTACAGTTCTTTAGAGGAGATACTATTTTATTAAAGTTCCATCTACCCAGTAGAATGATAATTAGTCTTACTTGCATTGTTCTTATGATTACACTAGGGGAAGAAGCGGAGAGATACGACGAACAATGTGAAGAGTCAAAAATCAGAATGAATAAAATTGTTCGAGCCAATCTCAGAGTTCGTCTTGGAGATGTCGTATCTGTCCATCAGTGTCCTGATGTGAAGTATGGAAAGCGGGTTCATATCCTCCCTGTTGATGATACAATAGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCGGTAAGGAAGGGTGACCTGTTCTTAGTCCGGGGTGGAATGAGAAGTGTTGAGTTCAAAGTCATAGAGACAGACCCTGGTGAATACTGTGTTGTTGCACCTGATACCGAGATCTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGATATGATGATGTTGGAGGTGTGAGGAAGCAAATGGCTCAGATTCGTGAATTAGTGGAATTACCACTTAGACACCCACAACTTTTCAAATCGATTGGTGTAAAGCCTCCAAAAGGGATATTGCTATATGGGCCTCCTGGATCTGGAAAGACTCTAATAGCAAGAGCTGTTGCCAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGGCCGGAAATAATGTCAAAGTTAGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCCCCTTCAATTATATTTATTGATGAGCTTGATTCCATTGCTCCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGACGTATCGTGTCCCAACTTCTTACCTTGATGGATGGCCTCAAGACTCGAGCACATGTTATTGTTATTGGAGCAACTAATAGACCCAACAGCATCGACCCTGCGTTGAGGAGATTTGGAAGATTTGATCGGGAGATCGATATTGGTGTACCAGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAAAACATGAAACTTGCAGAGGATGTTGATCTTGAGAGAGTTGCAAGGGATACCCATGGTTATGTTGGTGCTGATCTTGCCGCTCTTTGCACTGAAGCTGCACTCCAGTGTATTCGAGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATAGATGCTGAGGTTTTGAATTCCATGGCTGTAACCAATGATCATTTCCAAACTGCTTTAGGGTCTTCTAACCCGTCCGCCTTGCGGGAAACTGTTGTGGAGGTTCCAAACGTTTCATGGGATGATATTGGTGGGTTGGAAAATGTTAAAAGAGAGCTCCAGGAGACTGTCCAATACCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTTCTCTTTTATGGGCCCCCTGGCTGTGGTAAAACGCTACTTGCTAAGGCAATTGCCAATGAATGCCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACGATGTGGTTTGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCAGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATAGCAACCCAGCGTGGTAGTTCTGTTGGAGATGCTGGTGGGGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACTGTGTTTATAATTGGGGCAACAAACAGGCCAGACATTATAGACCCCGCGCTGCTGAGACCGGGACGTCTGGACCAATTAATATACATCCCACTCCCTGACGAGTCTTCTCGTCTTCAAATTTTCAAAGCATGTCTGCGAAAGTCGCCAGTGGCGAAAGATGTCAATCTATCAGCTTTTGCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATTTGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGTACTTCTTTACGACTTTACCAAAAAAAGAATTTTACAGTTTGATGTGGCAGCAACTTTGACTCTGAACCGGTCACCCATTTGCTCTTTCCAGCTGATAAGGCCAAAGCTGATAATAGAAAAACAACTGAAGAAACCACAATCTAACCTAAATATGGGGCCTTCAAGAAAAACTACATTTTTTTCATGGAAAAAAAATCAGAATTCTTCAGTGACAAGCTTAGTAATAAAGGTCCTCATGTATCTTTTCCCTTCCATGGAAACTGAAACCAACGTACTTTCCTTAAAAGTTGGCATTTACACTAACTTCTTGACTCTACTTTTTCTTAAACTAGTTGTAATCTGCCAAAAACTTTCTTTCTTTAGGCTTTACTTGTTTGAGTTCTTGACTCTGCTTTTTCTTAAACTAGATCTCGAAAGGGAGAGAAAGCAAGGTGAAAACTCGGAAGCCATGGAAGAAGACATCGATGAAGTCTCGGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGGAGAAGTGTTAGTGATGCAGACATCAGGAAGTACCAGCTCTTTGCTCAGACCCTACAACAATCTCGTGGGATTGGTTCCGAGTTTCGATTCCCCGATCGAACTGAGAATGTAGCAGCGGGAGCTGCGGACCCATTTGCTTCGACCATGGGTGCTGGAGATGATGATGATCTTTACAGCTGA 2910 42.85 MTDPTGLTASDKGQEPSSSSDQKSTTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKFHLPSRMIISLTCIVLMITLGEEAERYDEQCEESKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNDHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVNLSAFARYTHGFSGADITEICQRACKYAIRENIEKVLLYDFTKKRILQFDVAATLTLNRSPICSFQLIRPKLIIEKQLKKPQSNLNMGPSRKTTFFSWKKNQNSSVTSLVIKVLMYLFPSMETETNVLSLKVGIYTNFLTLLFLKLVVICQKLSFFRLYLFEFLTLLFLKLDLERERKQGENSEAMEEDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTENVAAGAADPFASTMGAGDDDDLYS 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26118060 26124288 + Lsi06G015670.1 Lsi06g01567 666297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01567 969 CDD AAA 238 401 - -
Lsi06g01567 969 SMART CDC48_2_2 157 223 IPR004201 -
Lsi06g01567 969 Pfam Cell division protein 48 (CDC48), N-terminal domain 43 138 IPR003338 -
Lsi06g01567 969 SMART CDC48_N_2 43 140 IPR003338 -
Lsi06g01567 969 Gene3D - 403 497 - -
Lsi06g01567 969 MobiDBLite consensus disorder prediction 1 33 - -
Lsi06g01567 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 747 IPR027417 -
Lsi06g01567 969 MobiDBLite consensus disorder prediction 949 969 - -
Lsi06g01567 969 Gene3D - 868 925 - -
Lsi06g01567 969 SMART AAA_5 268 404 IPR003593 -
Lsi06g01567 969 SMART AAA_5 541 680 IPR003593 -
Lsi06g01567 969 Pfam ATPase family associated with various cellular activities (AAA) 272 401 IPR003959 GO:0005524|GO:0016887
Lsi06g01567 969 Pfam ATPase family associated with various cellular activities (AAA) 545 678 IPR003959 GO:0005524|GO:0016887
Lsi06g01567 969 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 17 744 - -
Lsi06g01567 969 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 883 943 - -
Lsi06g01567 969 Gene3D - 679 737 - -
Lsi06g01567 969 SUPERFAMILY ADC-like 39 137 IPR009010 -
Lsi06g01567 969 ProSitePatterns AAA-protein family signature. 648 666 IPR003960 GO:0005524|GO:0016887
Lsi06g01567 969 Gene3D - 237 401 IPR027417 -
Lsi06g01567 969 PANTHER AAA-FAMILY ATPASE 17 744 - -
Lsi06g01567 969 PANTHER AAA-FAMILY ATPASE 883 943 - -
Lsi06g01567 969 ProSitePatterns AAA-protein family signature. 372 390 IPR003960 GO:0005524|GO:0016887
Lsi06g01567 969 Gene3D - 502 678 IPR027417 -
Lsi06g01567 969 Pfam AAA+ lid domain 700 737 IPR041569 -
Lsi06g01567 969 Pfam AAA+ lid domain 424 466 IPR041569 -
Lsi06g01567 969 Gene3D - 20 139 - -
Lsi06g01567 969 Pfam Cell division protein 48 (CDC48), domain 2 159 222 IPR004201 -
Lsi06g01567 969 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 55 929 IPR005938 GO:0016787
Lsi06g01567 969 CDD AAA 511 678 - -
Lsi06g01567 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 493 IPR027417 -
Lsi06g01567 969 SUPERFAMILY Cdc48 domain 2-like 139 231 IPR029067 -
Lsi06g01567 969 Gene3D - 140 236 - -
Lsi06g01567 969 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01567 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1362.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01312 Lsi-Chr1:11387008 Lsi06g01567 Lsi-Chr6:26118060 1.09E-20 dispersed
Lsi02g01010 Lsi-Chr2:10334084 Lsi06g01567 Lsi-Chr6:26118060 5.42E-46 dispersed
Lsi02g01119 Lsi-Chr2:13015678 Lsi06g01567 Lsi-Chr6:26118060 4.30E-39 dispersed
Lsi02g02368 Lsi-Chr2:30334525 Lsi06g01567 Lsi-Chr6:26118060 8.11E-49 dispersed
Lsi04g00359 Lsi-Chr4:3589046 Lsi06g01567 Lsi-Chr6:26118060 1.81E-53 dispersed
Lsi06g01567 Lsi-Chr6:26118060 Lsi08g00622 Lsi-Chr8:14550646 2.52E-39 dispersed
Lsi06g01567 Lsi-Chr6:26118060 Lsi03g02015 Lsi-Chr3:31545609 1.76E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01567 Lsi_Chr06 FPKM 3.149606 2.82265 0.0 0.0 2.9598 2.771426 4.698778 0.475407 0.0 0.0