Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01569 ATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTCTGTTTTTCAGTCTTATATCCCTTCCTCCTTCTAAGAACTTCCGCCATTAATGAACAGGGTCAAGCTCTACTCAATTGGAAGCTAAGTTTGAATGGATCAAACGAGGCTCTATATAATTGGAACCCCAACAATGAAAATCCATGTGGGTGGTTCGGAATCACTTGCAACAGAAACAGAGAAGTAGTGGAAGTAGTACTGAGGTACGTGAACTTACCTGGAAAGCTTCCATTGAATTTCTCTCCATTGTCATCCTTGAACAGGCTCGTCTTGTCTGGAGTGAACCTTACTGGTTCAATTCCTAAAGAGATCAGTGCTCTTAGCCAGCTGCGTACCTTGGAACTCAGTGACAATGGCCTAACTGGAGCAATCCCAAGTGAAATATGTGCTTTGGTAAATCTCGAACAGCTTTATCTGAATTCGAATCAACTCGAAGGGTCAATACCTGCAGGGATCGGGAATCTCACAAACTTGAAGGAGTTGATTCTCTATGACAATCAGTTAAGTGGTGAAATTCCCATTAGCATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACTTGGTTCTGTGCCGGAAGAAATTGGTAATTGCAGCAGTTTGGTGATTCTTGGTTTAGCTGAAACAAGCATCTCCGGCTTTCTTCCAGCTAGTCTTGGCCGCCTCAAGAAGCTTCAAACATTGGCAATCTATACTGCACTTCTCTCCGGCCAGATTCCTCATGAACTTGGTGACTGCACTGAGCTTCAAAACATCTATCTCTACGAGAACTCGCTCTCCGGCTCGATTCCAAGCTCGTTAGGAAGGTTACAAAATCTTCAGAGTGTGCTAGTATGGCAGAACAATTTGGTCGGCGTTATACCGCCGGAGCTAGGTAGGTGTGACCAATTATTCGTCATCGACATTTCAATTAATTCCCTGACGGGAAGCATTCCTTCAACATTTGGGAACTTAACATTGCTCCAAGAATTGCAACTGAGTTCAAATCAGTTATCCGGTGAGATTCCGAAGGAGATCGGAAATTGCCTGAGAATCACTCACATCGAGCTTGATAATAACCAGCTCACTGGTACGATCCCCTCTGAATTGGGAAACCTCACCAATCTTACATTGCTTTTCTTGTGGCAAAACAAGCTCGAGGGGAGTATTCCACCCACCATTTCGAATTGTCGCAATCTCGAGGCGTTGGATTTATCATTGAATGCCTTGACAGGTTCAATTCCGACGGGAGTTTTCCAGTTGAAAAAACTTTCCAAGCTTCTGCTCCTCTCCAACAACCTCTCCGGTGTCATACCGCCGGCAATAGGTAACTGTTCGTCTCTGTTTCGGTTCCGAGCTAATAACAACAAGCTCGCCGGAGAAATTCCGCCGGAGATTGGGAGTTTGAAGAACTTGATTTTCCTAGACCTCGGGAACAATCACCTCACTGGAGCGTTGCCTCCGGAGATTTCCGGCTGTCGAAATTTGACATTCCTCGATTTGCATTCTAACTCTTTAAAATTTCTTCCAGAAGAATTCAACCAGCTTTCTTCTCTACAGTACGTTGATCTCTCAAATAATCAAATCGAAGGGACGCCGAATCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGGTTCTCGGGGCCAATACCTACTGAAATCGGTTCCTGCTTGAAACTTCAGTTACTGGATTTAAGTTGCAATCAGCTTTCCGGAAACATTCCTCCGAGCTTAGGCAAGATTCCTTCACTAGAAATTGGTCTCAATCTGAGCTTAAACCAACTATCCGGCGAGATTCCGTCGGAGTTTGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGTGACCTCCACATTCTCGCTGACCTACAAAATCTCGTAATCCTCAATGTATCACACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTCTTCACGCAGCTCCCTCTGAGCGTCCTCTCGGGTAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACACCGACAACCACAGCGGCGGCGGTCACCATACGCTAGCGGCCCGAGTGGCCATGGTGGTGTTACTGTGCACGGCGTGCGCACTGCTATTAGCAGCAGTTTATATCATTCTCAAAGATAGACATTCATGTCGAAGATGCTTCAATGGGTCCCGCGGTGAAGATCCAGACGCCGCCTTCGACAGCGACTTGGAGCTTGGCTCAGGTTGGGAAGTGACACTATACCAGAAGCTCGATCTCTCAATCTCCGACGTAATCAAGTGCTTAACGCCGGCCAATGTCATCGGCCGCGGCAAGACCGGCGTGGTGTACAGAGCCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCGGATAAGTTCTCGGCGGCGGCGTTTTCATCCGAAATCGCCACATTGGCCAGAATCCGGCACCGGAACATCGTCCGATTACTAGGGTGGGGAGCGAATCGGAGGACGAAGTTACTGTTCTACGATTACTTGCCGAATGGGAATTTGGGCACGTTGCTACACGAAGGGAATGGGCGCGTGGGGCTGGACTGGGAGAGTAGATTCAAGATAGCGCTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCGATATTGCACCGGGACGTGAAGGTTCACAATATTCTGTTGGGTGACCGCTGCGAGGCGTGTTTAGCGGACTTTGGGCTCGCCCGCTTGGTCGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGCTCCTACGGCTACTTTGCACCTGGTAAGCTCTAA 2877 48.14 MPVNSWTLPSSILILCFSVLYPFLLLRTSAINEQGQALLNWKLSLNGSNEALYNWNPNNENPCGWFGITCNRNREVVEVVLRYVNLPGKLPLNFSPLSSLNRLVLSGVNLTGSIPKEISALSQLRTLELSDNGLTGAIPSEICALVNLEQLYLNSNQLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLVILGLAETSISGFLPASLGRLKKLQTLAIYTALLSGQIPHELGDCTELQNIYLYENSLSGSIPSSLGRLQNLQSVLVWQNNLVGVIPPELGRCDQLFVIDISINSLTGSIPSTFGNLTLLQELQLSSNQLSGEIPKEIGNCLRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEALDLSLNALTGSIPTGVFQLKKLSKLLLLSNNLSGVIPPAIGNCSSLFRFRANNNKLAGEIPPEIGSLKNLIFLDLGNNHLTGALPPEISGCRNLTFLDLHSNSLKFLPEEFNQLSSLQYVDLSNNQIEGTPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLSGEIPSEFANLDKLGSLDLSYNQLSGDLHILADLQNLVILNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYTDNHSGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRRCFNGSRGEDPDAAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANVIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGTLLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKVHNILLGDRCEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPGKL 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26130919 26133795 - Lsi06G015690.1 Lsi06g01569 666299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01569 958 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lsi06g01569 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672|GO:0006468
Lsi06g01569 958 Gene3D Phosphorylase Kinase; domain 1 766 857 - -
Lsi06g01569 958 Pfam Protein kinase domain 786 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01569 958 Pfam Leucine Rich repeat 409 425 IPR001611 GO:0005515
Lsi06g01569 958 Pfam Leucine rich repeat 512 566 IPR001611 GO:0005515
Lsi06g01569 958 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Lsi06g01569 958 Pfam Leucine rich repeat 99 158 IPR001611 GO:0005515
Lsi06g01569 958 PANTHER OS01G0170300 PROTEIN 2 955 - -
Lsi06g01569 958 SUPERFAMILY RNI-like 325 669 - -
Lsi06g01569 958 ProSiteProfiles Leucine-rich repeat profile. 508 529 IPR001611 GO:0005515
Lsi06g01569 958 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Lsi06g01569 958 SMART LRR_typ_2 649 682 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 386 410 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 507 528 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 121 144 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 290 314 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 529 552 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 482 506 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 145 168 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 411 434 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 169 193 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 553 577 IPR003591 -
Lsi06g01569 958 SMART LRR_typ_2 338 362 IPR003591 -
Lsi06g01569 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 955 - -
Lsi06g01569 958 Gene3D Ribonuclease Inhibitor 432 699 IPR032675 -
Lsi06g01569 958 Gene3D Ribonuclease Inhibitor 186 285 IPR032675 -
Lsi06g01569 958 Gene3D Ribonuclease Inhibitor 31 185 IPR032675 -
Lsi06g01569 958 Gene3D Transferase(Phosphotransferase) domain 1 858 957 - -
Lsi06g01569 958 SUPERFAMILY L domain-like 53 398 - -
Lsi06g01569 958 SUPERFAMILY Protein kinase-like (PK-like) 773 955 IPR011009 -
Lsi06g01569 958 ProSiteProfiles Protein kinase domain profile. 782 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01569 958 Gene3D Ribonuclease Inhibitor 363 431 IPR032675 -
Lsi06g01569 958 Gene3D Ribonuclease Inhibitor 289 362 IPR032675 -
Lsi06g01569 958 ProSiteProfiles Leucine-rich repeat profile. 628 650 IPR001611 GO:0005515
Lsi06g01569 958 SMART serkin_6 782 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01569 958 SMART LRR_sd22_2 626 651 - -
Lsi06g01569 958 SMART LRR_sd22_2 169 195 - -
Lsi06g01569 958 SMART LRR_sd22_2 145 160 - -
Lsi06g01569 958 SMART LRR_sd22_2 529 547 - -
Lsi06g01569 958 SMART LRR_sd22_2 386 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01569 - - - csv:101206847 1757.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00394 Lsi06g01569 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01810 Lsi-Chr5:25345800 Lsi06g01569 Lsi-Chr6:26130919 0 dispersed
Lsi06g01569 Lsi-Chr6:26130919 Lsi09g01162 Lsi-Chr9:18703562 0 dispersed
Lsi06g01569 Lsi-Chr6:26130919 Lsi02g00394 Lsi-Chr2:3349308 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83751 PF00069 Pkinase 1.60E-28 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01569 Lsi_Chr06 FPKM 44.81636 48.960144 29.129288 27.229698 46.460548 42.487526 42.828789 44.783901 47.537487 44.484142