Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01572 ATGGGGAAGCTGGGGGAACTAAAAGCGAGGCTGAGGGAGGCGGAAGATGAACTGGTTAAAGCTCTTGCAGTTATTTTTCCACTAAAATTGTTGAGAATCTTTTCCAACGGTAGTGTTTTCGATTTGGAGCAAGTGATGGGCGAAAGGTTGGTGTTAGTGATGCTGGTATATCGTTCCTTACTTAAAATTAGCACTCATCGTAAGGGCTTATTTCCTTTATACTTGCATACTTTTGTAGTGAAGACTCGTAAAGAGGCGAAACGCCTCGCACTCATTGACTCCCTTGCAACTTCAAAATCTAGAATAGAAGAGCTCAGGAATACTTTACAAGACTGCATAGCAAGGAGGGATGAATATTCTACTATTATATCTCAGCAATCCTCTGGTAAATGCACTGTTATCAACAAGTTGGATATGCATTGTTCAATCTTTATTTACTACTTACCTGCAAGATCTTACGACAGATCTTTTTCAAACTACAACTTCTCTAGTTCCATGCAAAAACTGATTACTTCTCTCTCTTTCCAATGCCATCAAAAGCTTTATCTTCATCTGAACGCAAGGAATCCCAAGAGAGTGAGTGCAGAAATGAAATACAAGAGGCTATTTCTTGGTACAAAAGAGTTCTTGATTTCCATATTGAAGGAGGACATGTTTTTGGGAAAGCTTGAGATAAATTTCTTGACAACTTATCTCGGCATGTCAGGGGTAAAATTCTCTTTCAAGAAAATAAATATAGACGATCCTGATAAAGAATATTCTTTTACCATCCGTCATGCGAATGATACTTATATGTATTGTAACCCATCCTTGCCAGATAGTAAAGAGTTGATACATGAATTAAATAAAACAAATGGTTTGTTCAAGCTCGTCAGGATCATGAGACAGAGGTTCCAGGAGGCTGCAGCAGAAGGAGTTGGGGCTCAAGCATTGTCTCTGCATCAAGGTTCAACGATAATCTCTATGTCAGCTCCAGTTTTGTCATCATCAACTGAGAGAAGTGAATCTTCAACTGAAGAAATTAGCAAGGATGAACTTGAGGAAACTAACATTCATTCTAAGAAAATTCTACCCGGAAAGAAACCAGCTAACAAATCCAGTGGATCTGCATTTTCTTTGCGTCGATCTCCTCGTTTTAAGGTCAGGAAATAA 1152 38.72 MGKLGELKARLREAEDELVKALAVIFPLKLLRIFSNGSVFDLEQVMGERLVLVMLVYRSLLKISTHRKGLFPLYLHTFVVKTRKEAKRLALIDSLATSKSRIEELRNTLQDCIARRDEYSTIISQQSSGKCTVINKLDMHCSIFIYYLPARSYDRSFSNYNFSSSMQKLITSLSFQCHQKLYLHLNARNPKRVSAEMKYKRLFLGTKEFLISILKEDMFLGKLEINFLTTYLGMSGVKFSFKKINIDDPDKEYSFTIRHANDTYMYCNPSLPDSKELIHELNKTNGLFKLVRIMRQRFQEAAAEGVGAQALSLHQGSTIISMSAPVLSSSTERSESSTEEISKDELEETNIHSKKILPGKKPANKSSGSAFSLRRSPRFKVRK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26142581 26144789 + Lsi06G015720.1 Lsi06g01572 666302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01572 383 Gene3D Chromosome segregation protein Spc25 219 304 - -
Lsi06g01572 383 Coils Coil 95 115 - -
Lsi06g01572 383 MobiDBLite consensus disorder prediction 336 355 - -
Lsi06g01572 383 Pfam Chromosome segregation protein Spc25 236 299 IPR013255 GO:0007059|GO:0031262
Lsi06g01572 383 PANTHER KINETOCHORE PROTEIN SPC25-RELATED 76 137 IPR045143 GO:0007059|GO:0031262
Lsi06g01572 383 PANTHER KINETOCHORE PROTEIN SPC25-RELATED 235 381 IPR045143 GO:0007059|GO:0031262
Lsi06g01572 383 MobiDBLite consensus disorder prediction 324 383 - -
Lsi06g01572 383 PANTHER - 76 137 - -
Lsi06g01572 383 PANTHER - 235 381 - -
Lsi06g01572 383 Coils Coil 4 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01572 K11550 SPBC25, SPC25; kinetochore protein Spc25, animal type - csv:101205655 224.942
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g793 . . . . . Bpe13g00247 Bma06g00213 . . . Cma10g00112 . Car10g00101 . Sed08g0095 . . Bhi02g00491 Tan09g2282 Cmetu02g0582 . Hepe09g0219 . . Cla06g01681 Cam06g1868 Cec06g1917 Cco06g1922 Clacu06g1823 Cmu06g1766 Cre06g2582 . . Cone13ag0156 Cone19ag0155 . . . . . . Bda11g01660 . . . . . . Cmo10g00116 Cmo11g00083 . . . . . Cpe18g00853 . . . . . . . . . . . . . . Lsi06g01572 Csa01g00129 Chy02g02598 Cme02g01994
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008893 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01572 Lsi_Chr06 FPKM 4.99205 5.686707 14.228473 14.992034 11.733429 13.888933 11.935974 5.333269 5.294201 5.481213