Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01575 ATGGCGTCGCACGCTCATCTCGACGACGATGATGATTTTGGAGGCGATTTCACTGGAACGCACAACAATAGGCATTCAGGGAATAAGAGAGGTTTTGGCGATCTCGAAGATGACGAGGACGACTTCTTTGGCTCCAAAAAGGCTAACTCTAAAGCAGAAGAAACTGCTCCAGGTGTAGCGACAAGGATGATTCTGTCTCTTCGTGAGAGTCTTGAAAGCTGCGAGGATAAACTTGCAACATGTCGGACAGAGCTTGAAACTGCTAAGTCTGAGATTCAGAAGTGGATTTCCTCATTTCAGAATGAGAATTTCATTCCTTCTGGGACTTCCCCTGAACCTAAATATGTGGTCAGTTTTCTTCAATCACTGAAGTCCTCAGAGGAGTCTCTAAGAGACCAGGCTGCAGTCCGGGACTTGAAAGCACAGCTGAAGCCACCATCAATGCAGGCAAGAAGATTATTGTTAGATCCTGCAATACATGAAGAGTTTACTCGTCTGAAGAATTTGGTTGAAGAAAAAGACAAAAAAGTGAAGGAGCTGCAAGATAACATTGCCGCAGTCAGTTTTACTCCATCTAGCAAGATGGGTAAAATGCTGATGGCTAAATGCAGGACTCTGCAAGAGGAAAATGAAGAGATAGGAAATCAAGCTGCTGAAGGAAAGATGCACGAGTTAGGAATGAAGTTAGCCTCGCAGAAAGCTCAAAATACCGAACTTAGACTTCAGTATGAAGCCTTGCAGAATCATATGGAAGGGCTGACAAATGACGTTGAAAGATCAAACGAATTGGTCATCGTCTTGCAAGAGAAACTAGCCGAGAAGGATCGTGAGATTCAAATCTTGAAGGAAACTTTGCAACAGCCGAAGAGCCCAATAGTGGAGGACGATAAAGCTGATTCGCCACCAACCGAGAAGCAGCCCAAAGACGAGATGATTGTTTCTGCCGATGCTGAAAGCTGA 960 44.58 MASHAHLDDDDDFGGDFTGTHNNRHSGNKRGFGDLEDDEDDFFGSKKANSKAEETAPGVATRMILSLRESLESCEDKLATCRTELETAKSEIQKWISSFQNENFIPSGTSPEPKYVVSFLQSLKSSEESLRDQAAVRDLKAQLKPPSMQARRLLLDPAIHEEFTRLKNLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIGNQAAEGKMHELGMKLASQKAQNTELRLQYEALQNHMEGLTNDVERSNELVIVLQEKLAEKDREIQILKETLQQPKSPIVEDDKADSPPTEKQPKDEMIVSADAES 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26161885 26167410 + Lsi06G015750.1 Lsi06g01575 666305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01575 319 MobiDBLite consensus disorder prediction 289 319 - -
Lsi06g01575 319 MobiDBLite consensus disorder prediction 27 48 - -
Lsi06g01575 319 Coils Coil 163 183 - -
Lsi06g01575 319 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 134 290 - -
Lsi06g01575 319 MobiDBLite consensus disorder prediction 1 18 - -
Lsi06g01575 319 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 1 133 IPR033757 GO:0000381|GO:0005634|GO:0080009
Lsi06g01575 319 Coils Coil 71 91 - -
Lsi06g01575 319 Pfam WTAP/Mum2p family 120 262 IPR033757 GO:0000381|GO:0005634|GO:0080009
Lsi06g01575 319 Coils Coil 229 284 - -
Lsi06g01575 319 PANTHER WILMS' TUMOR 1-ASSOCIATING PROTEIN 134 290 IPR033757 GO:0000381|GO:0005634|GO:0080009
Lsi06g01575 319 MobiDBLite consensus disorder prediction 1 58 - -
Lsi06g01575 319 PANTHER PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED 1 133 - -
Lsi06g01575 319 MobiDBLite consensus disorder prediction 282 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01575 K22824 WTAP; pre-mRNA-splicing regulator WTAP - csv:101204933 546.584
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g796 . . Bda06g00611 . . . . Bma12g01046 . . Cma10g00110 Cma11g00082 Car10g00099 Car11g00075 Sed08g0092 . Cpe04g01570 Bhi02g00492 Tan09g2284 Cmetu02g1221 . Hepe09g0221 . . Cla06g01683 Cam06g1870 Cec06g1919 Cco06g1924 Clacu06g1825 Cmu06g1768 Cre06g2584 . . Cone13ag0158 Cone19ag0157 . . . . . Blo15g00260 . . Bpe07g00852 . . . . Cmo10g00114 Cmo11g00082 . . . . . Cpe18g00855 . . . . . . . . . . . . . . Lsi06g01575 Csa01g00127 . Cme02g01996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005496 1 1 1 1 1 2 1 2 2 0 2 2 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01575 Lsi_Chr06 FPKM 2.60046 2.924022 7.512873 7.857269 0.822333 0.823978 0.843412 13.730673 11.474648 13.472438