Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01577 ATGACTGAGATAAAGCGGGTGGCATTGATGTTCATGAGCACGAGAATCCTCCCACATCTTTGTGGTATACTATATTTGGATGAGATGTTAGAAGATACGCTTATTGATCTTTTTTTGTCCGGTTATTCCAATTCAGAAGTCATAGCCACTAATGACAGCATATCTCCTACACCTTCAACAATTAATGATGCTAATAACTTTCAGTCATCAAGTGATGGCTATGGCGATACTCAGAGGACGGAAGGTGAATGGTTCCAAGATGAAAGTCATGCAATCATGAATTCTAGTGAAAGAGTATTAGATGGAGGCTATGATGATACTTTGAAGATGGAAGGTGAATTGTTCCAAGAAGAAAATCATACCATATTGAATCCAAGCGAAAGTGTATCAGATGGAGGTGTGTCCATGGATGAAGATAACTGGAAGGCCCAGTATGGTCAAGTCACTACTTATGGGGAAGCAATTCCCAAACTCTCTGTTCTGGATATCTGGGACTGGTCGACGGTCTCAGAGTCTAAGACACGGAAAAAGGGCAAGGTTATGAGGTTGGTTGGAAGACTGGTGAGGAAGTCTGCAAAGCTTCATCCTTCAGTGTCTTCAAATGGTGCTCTTCTTAAAACAGCTCCAATATCTGAAGCACATTTAGATTTGGTTCGAGTTGCAACCGGGAGAATCTACAAGTTACATAGTCCTAGTAAGAAGTATTTGGCCACCATATCAACTTTTGATTCATCCAACCCTACAAAAGAATGGGGTTTCCCTGATTTATTAGATAGAATAACTGTTCTTGCTAATAACGAAGCAAAAGTTGCAAGCACAGCCACTGTTAGCATGGCTGCATCTACATTGTTAGATAATCTCTCTGCGACGGGAAAGTGTTCAAACCAAAATCAATATAGAGACAGAGCTGCTGAGAGAAGAATCCTTCATGGAGGTTTCGGGGTTGGTCCCGGGCAGAAGAATTCAGCTATCGATCATGGTGATTTTACATCATCACCCCCTTGTGGCTATACCGAGAGCACTGCAGCTGAAGCCATGAATATTTCATTTGGGGCTGGTAGCTACGCACGAAAAATCTTGAAAAGCATGGGGTGGAAAGAGGGAGAGGGTCTTGGGAACAGCACGAAGGGCATGGTGGAACCACTTCAAGCTGTTGGAAACATAGGAAATGCCGGATTAGGCTGGCCTCAGGGAATTAAAAAACTCGACATCAACTAA 1218 42.69 MTEIKRVALMFMSTRILPHLCGILYLDEMLEDTLIDLFLSGYSNSEVIATNDSISPTPSTINDANNFQSSSDGYGDTQRTEGEWFQDESHAIMNSSERVLDGGYDDTLKMEGELFQEENHTILNPSESVSDGGVSMDEDNWKAQYGQVTTYGEAIPKLSVLDIWDWSTVSESKTRKKGKVMRLVGRLVRKSAKLHPSVSSNGALLKTAPISEAHLDLVRVATGRIYKLHSPSKKYLATISTFDSSNPTKEWGFPDLLDRITVLANNEAKVASTATVSMAASTLLDNLSATGKCSNQNQYRDRAAERRILHGGFGVGPGQKNSAIDHGDFTSSPPCGYTESTAAEAMNISFGAGSYARKILKSMGWKEGEGLGNSTKGMVEPLQAVGNIGNAGLGWPQGIKKLDIN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26167313 26171827 - Lsi06G015770.1 Lsi06g01577 666307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01577 405 ProSiteProfiles G-patch domain profile. 352 398 IPR000467 GO:0003676
Lsi06g01577 405 PANTHER RNA-BINDING PROTEIN 27 397 - -
Lsi06g01577 405 SMART G-patch_5 350 396 IPR000467 GO:0003676
Lsi06g01577 405 Pfam G-patch domain 354 394 IPR000467 GO:0003676
Lsi06g01577 405 PANTHER D111/G-PATCH DOMAIN-CONTAINING PROTEIN 27 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01577 - - - cmax:111485064 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01577 Lsi-Chr6:26167313 Lsi09g00890 Lsi-Chr9:10458969 2.76E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g797 . . . . . . . . . . Cma10g00109 . Car10g00098 . Sed12g2460 . . Bhi02g00494 Tan09g2285 Cmetu02g1933 . Hepe09g0222 . . Cla06g01684 Cam06g1871 Cec06g1920 Cco06g1925 Clacu06g1826 Cmu06g1769 Cre06g2585 . . Cone13ag0159 . . . . . . Blo15g00259 . . Bpe07g00853 . . . . Cmo10g00113 . . . . . . Cpe18g00856 . . . . . . . . . . . . . . Lsi06g01577 Csa01g00126 Chy02g02600 Cme02g01997
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008649 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01577 Lsi_Chr06 FPKM 69.575806 77.885544 68.233376 71.746887 86.388023 87.992744 86.123932 44.156235 42.289249 41.997803