Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01582 ATGTGGTTTATTTTGCAAGTTGCAGTGCATGGCCTCGGTCAGTACAATCGGCAAAGGATGGCATCATCAAGTTCTTACAATTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTTCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCTAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCCTATGAGGCCGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTTGGAGCCATCTCCTTCCTTCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAGCCTCGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCAGGAAATAACATCAATGAAGGAGGAGGAGGAGATGGCAATATTTGA 618 46.76 MWFILQVAVHGLGQYNRQRMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPSLGARPRALDQYHTSSSTSGYYNQHHLPAFPMAYPLPWNENSSGNNINEGGGGDGNI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26226856 26233778 - Lsi06G015820.1 Lsi06g01582 666312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01582 205 Coils Coil 108 135 - -
Lsi06g01582 205 Pfam Lateral organ boundaries (LOB) domain 29 126 IPR004883 -
Lsi06g01582 205 ProSiteProfiles LOB domain profile. 28 129 IPR004883 -
Lsi06g01582 205 PANTHER ELONGATED PETIOLULE 1 20 203 - -
Lsi06g01582 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 203 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00402 Lsi06g01582 CCT
Lsi02g00402 Lsi06g01582 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01359 Lsi-Chr3:24507575 Lsi06g01582 Lsi-Chr6:26226856 1.06E-75 dispersed
Lsi06g01582 Lsi-Chr6:26226856 Lsi10g01458 Lsi-Chr10:18689456 7.71E-48 dispersed
Lsi10g00645 Lsi-Chr10:9014651 Lsi06g01582 Lsi-Chr6:26226856 7.79E-51 transposed
Lsi11g00839 Lsi-Chr11:10483445 Lsi06g01582 Lsi-Chr6:26226856 7.34E-59 transposed
Lsi02g01506 Lsi-Chr2:20946486 Lsi06g01582 Lsi-Chr6:26226856 4.77E-29 transposed
Lsi02g02933 Lsi-Chr2:35515390 Lsi06g01582 Lsi-Chr6:26226856 5.65E-29 transposed
Lsi02g00402 Lsi-Chr2:3394358 Lsi06g01582 Lsi-Chr6:26226856 5.67E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25554 PF03195 LOB 3.60E-42 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01582 - - cmos:111430134 325.865