Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01588 ATGAATCCTTATGACCATAGATACGCCGATCCCAATTCCTACCGCGAACGCCGAAGTGACCTAGTGGGTCTACAGCCTGCTGCGCCACCGCCAATAGTAGGGCGTGAATCCTTGTACAAAGGCTATCAACCTCCTCCAGTTCCATACTATGGCCGTGAAAGAGGTGGCGGAGGTGCTTTACCTAATGCAGGAGGCGTCAATGGCTTCCCACGATTTCAGCCTCCCGCAGGACCGTTTAATATCGGCCGCGGTGGTAGTGGTTTCGGTAGCAGCGGTGGTGGAAGGAGAATGTTTGATTCGGGGAGGGGCGGTAGAAGAACTGGTGGGAATATTGGTTTTGGAGGTGGACGTGGTGGAGGAACGGGATATGACGGCCGTGGTGGCGGAAGAGGGGCTGGACGTGGTGGTGGTGGTTCTTCAAGAGGGGATTTAGATAACATAGTCCTTCCGAGTCAGAATTTTGGCAATTTGGTCCCTTTTGAAAAGAATTTCTACAATGAGTGTCCTTCTGTACGTGCAATGACGGAGTCTGAAGTTAAGATTTACAGAGAGAGGCGTGATATTAGGGTGGAAGGATACGATGTCCCAAGACCAATTCGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGCCATGAAAGGAAGAGATTTGATTGGCATTGCTGAGACTGGCTCTGGGAAGACTCTGGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTATCGCATGGTGAAGGTCCTATTGTGTTGGTGTTAGCACCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGCTACTAAATTCGGGTTGCGTGCAAATATTAGAAGTACTTGCGTTTATGGTGGAGCTCCAAAGGGCCCTCAAATTCGTGATCTCAAAAACGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTGGAAGCTGGCCACACGAGCCTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCAGATAGAATGCTGGACATGGGATTTGAGCCTCAGATAAGGACAATCGTTAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTGCGTAACGCATATAAGGTGATTATTGGTTCACCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTCGTTGAAGTTTTGCCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTCGTTGAAGTGATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGATGTGATAAAGTAACGAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGCGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCAGAATTTAAGAGTGGAAGAAACCCCATAATGACAGCCACGGATGTGGCTGCAAGAGGGCTTGGTTAA 1533 47.1 MNPYDHRYADPNSYRERRSDLVGLQPAAPPPIVGRESLYKGYQPPPVPYYGRERGGGGALPNAGGVNGFPRFQPPAGPFNIGRGGSGFGSSGGGRRMFDSGRGGRRTGGNIGFGGGRGGGTGYDGRGGGRGAGRGGGGSSRGDLDNIVLPSQNFGNLVPFEKNFYNECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLSHGEGPIVLVLAPTRELAVQIQQEATKFGLRANIRSTCVYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTSLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLG 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26288150 26291485 - Lsi06G015880.1 Lsi06g01588 666318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01588 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 200 228 IPR014014 GO:0003724
Lsi06g01588 510 CDD SF2_C_DEAD 419 509 - -
Lsi06g01588 510 MobiDBLite consensus disorder prediction 83 145 - -
Lsi06g01588 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 408 IPR027417 -
Lsi06g01588 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 352 360 IPR000629 -
Lsi06g01588 510 Gene3D - 164 408 IPR027417 -
Lsi06g01588 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 510 IPR001650 -
Lsi06g01588 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 406 IPR014001 -
Lsi06g01588 510 MobiDBLite consensus disorder prediction 1 41 - -
Lsi06g01588 510 PANTHER LD32873P 153 509 - -
Lsi06g01588 510 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 153 509 - -
Lsi06g01588 510 SMART ultradead3 219 422 IPR014001 -
Lsi06g01588 510 Pfam Helicase conserved C-terminal domain 430 509 IPR001650 -
Lsi06g01588 510 MobiDBLite consensus disorder prediction 1 17 - -
Lsi06g01588 510 Gene3D - 409 510 IPR027417 -
Lsi06g01588 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 509 IPR027417 -
Lsi06g01588 510 Pfam DEAD/DEAH box helicase 224 395 IPR011545 GO:0003676|GO:0005524
Lsi06g01588 510 CDD DEADc_DDX5_DDX17 212 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01588 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01588 Lsi-Chr6:26288150 Lsi07g00565 Lsi-Chr7:6008123 1.80E-161 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01588 Lsi_Chr06 FPKM 1.716989 1.785934 1.673139 1.910334 4.803755 4.961129 4.729842 3.247536 3.141232 4.038419