Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01590 ATGGAACCACGACGGCGACGACCACCTCTGTTACTTCTACTTCAGCTCTGTCTCTTCTTCCTCTTCTTCTTTCCCTCTTATTCAGTTGATTTCATCTTCAATTCTTTCTCAAACGAATCGAATGGCACCGACATCATTCTTATTAGCGACGCGACATTCGATTCCCCTGTAATTCGTCTCAACAACGACTCAAACCCAAATTCAATCGGGCGAGCTTTCTATCACACGAAGCTGATTATGAAACCCACTTCGAATTCCACTACGATTTCTTCTTTTTCAACTTCCTTTGTGTTTTCGATCTTACTGGAAGTCGCTACAAGTCCAGGCTTCGGTATGGCCTTCGTTCTTTCCAATTCCACTTCCCTTCCCGGCGTTATAGCCGGCCAATACTTCGGTCTCTTCACAAATTCCACAACCCATGTCGTTGCTCCACTTCTCGCCGTTGAATTCGACACCGGCCGAAACACAGAGTTCAACGACCCAGATGATAGCCACATCGGAATCGATTTGAACAGTATGTTGTCGAGTAAAACAAACGGCGCTGGATATTTTGATTCTAATGGGCAATTTGTTCCGATTCAGATGAGAAATGGGCAAAACCTTCGCGCTTGGATCGAATTCGACGGGTCCAATTTCGAAATCAATGTCACAATTGCCCCAATTGGGATTCCTCGTCCTTCAATACCCACTTTGAGTTTTAGGGATCCTGTGATAGCAAATTATGTATCGACTGAAATGTTTGTGGGATTTTCAGCATCGAAGACAAAATGGGTTGAGGCGCAGAGGATAATGGCTTGGAGTTTTAGTGACACTGGGGTTGCTAGAGAGATTAACACCACAAATTTCCCTGTGTTTATGAGAGCATCATCGCCGTCTTCCCTGTCACCAGGATCCGTTGCCGGTATTGTAATTGGCTGTGTTGTGTTTCTGATCATAATTTTTGGATTTGGGGTTTATTGGTATTGGCAAAAGAACAGAGCAAAAGAAGAAGAAGATGAAATTGAGGATTGGGAGCTCGAATATTGGCCTCACAGATTCTCCAACGAGGAGCTTTCAAAGGCTACAGATGGATTTTCCGATGAAAATCTGTTGGGTTCCGGCGGATTTGGAAGGGTATTCAAAGGAACTTTACCAAACAACACGGAAATCGCCGTTAAGTGTGTAAATCACGATTCAAAACAGGGGTTAAAGGAATTCATGGCTGAAATCTCGAGTATGGGTAGGCTTCAACATAAAAACCTAGTCCAAATGCGAGGATGGTGTCGAAAAGGCAATGAATTAATGTTGGTTTACGATTTTATGCCGAATGGAAGCCTTAATCGGTGGATTTTTGACAGACCCACAACGCTACTCAGTTGGAAACAGCGCCGCCGTGTGCTCGCCGACGTTGCAGAGGGTTTGAACTATCTCCACCATGGTTGGGATCAGGTGGTAATTCACAGAGACATTAAATCGAGCAATGTATTGTTGGATTCGGAAATGAGAGGCAGAGTCGGCGATTTTGGGCTGGCGAAATTGTACCAACACGGCGAAACTCCGAACACCACTCGGGTAGTCGGGACTTTGGGGTATTTAGCGCCGGAGATTGCGACGGTGGCTACTCCGACGGCAGCTAGCGATGTATATAGTTATGGGGTTGTGGTTCTTGAAGTGGTGTGTGGGCGGCGGCCGATTGAGTTGGCGGCGGAGGAAGAAGAAATGGTACTTATTGATTGGGTGAGGGATCTTTACTCTGCCGGCCGGTTGATTGTGGCGGCGGACTCAAGAATCAGAGAGGAGTATGAAATTGAAGAGATTGAGTTAATGTTGAAGCTTGGTTTAGCTTGTTGTCATCCGGACCCGGAACGCCGGCCGACAATGAGAGAGGTGGTGGCAGTTTTGATCGGAGAACAACCGGCAGCCGAGTCTGTAGAGCTTTTATCGGGATTGGCTGGTGGCACGATTGATGACATCCCAGACGATGATGTGTGA 1971 46.42 MEPRRRRPPLLLLLQLCLFFLFFFPSYSVDFIFNSFSNESNGTDIILISDATFDSPVIRLNNDSNPNSIGRAFYHTKLIMKPTSNSTTISSFSTSFVFSILLEVATSPGFGMAFVLSNSTSLPGVIAGQYFGLFTNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMLSSKTNGAGYFDSNGQFVPIQMRNGQNLRAWIEFDGSNFEINVTIAPIGIPRPSIPTLSFRDPVIANYVSTEMFVGFSASKTKWVEAQRIMAWSFSDTGVAREINTTNFPVFMRASSPSSLSPGSVAGIVIGCVVFLIIIFGFGVYWYWQKNRAKEEEDEIEDWELEYWPHRFSNEELSKATDGFSDENLLGSGGFGRVFKGTLPNNTEIAVKCVNHDSKQGLKEFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDFMPNGSLNRWIFDRPTTLLSWKQRRRVLADVAEGLNYLHHGWDQVVIHRDIKSSNVLLDSEMRGRVGDFGLAKLYQHGETPNTTRVVGTLGYLAPEIATVATPTAASDVYSYGVVVLEVVCGRRPIELAAEEEEMVLIDWVRDLYSAGRLIVAADSRIREEYEIEEIELMLKLGLACCHPDPERRPTMREVVAVLIGEQPAAESVELLSGLAGGTIDDIPDDDV 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26295136 26297106 - Lsi06G015900.1 Lsi06g01590 666320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01590 656 Pfam Protein kinase domain 359 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01590 656 ProSitePatterns Legume lectins beta-chain signature. 146 152 IPR019825 -
Lsi06g01590 656 ProSiteProfiles Protein kinase domain profile. 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01590 656 Pfam Legume lectin domain 29 281 IPR001220 GO:0030246
Lsi06g01590 656 SUPERFAMILY Protein kinase-like (PK-like) 335 627 IPR011009 -
Lsi06g01590 656 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 286 IPR013320 -
Lsi06g01590 656 PANTHER - 12 643 - -
Lsi06g01590 656 CDD lectin_legume_LecRK_Arcelin_ConA 29 272 IPR001220 GO:0030246
Lsi06g01590 656 CDD STKc_IRAK 364 627 - -
Lsi06g01590 656 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 12 643 - -
Lsi06g01590 656 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Lsi06g01590 656 Gene3D Transferase(Phosphotransferase) domain 1 434 639 - -
Lsi06g01590 656 Gene3D - 27 286 - -
Lsi06g01590 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Lsi06g01590 656 SMART serkin_6 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01590 656 Gene3D Phosphorylase Kinase; domain 1 320 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01590 Lsi-Chr6:26295136 Lsi03g02127 Lsi-Chr3:32454582 3.39E-173 dispersed
Lsi06g01590 Lsi-Chr6:26295136 Lsi03g02126 Lsi-Chr3:32450062 1.21E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83752 PF00069 Pkinase 2.80E-52 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01590 - - cmo:103502376 1147.5