Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01592 ATGGCGGCCATTTCCTTAGCTTCCGCTTCCACTTCCTCTAAGCTTGTTTTCCCTCACCCTTCTTCTTCTTCTTCTTCCTCCTCCCCTTCTTCTTCCCTTCTCGTCAAACCCTCCTCTGTTACCAACCTTTCTTCCTCTTTCTTGAACCCTTCTTCTATTCGCCCTCTCTCCCTTTCTTCCCCCTCTGTAAACCGTCCTCGTTCCTTCACAATTCGAGCCGCCCGTGGCAAATTCGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGCCATGTCGACCATGGTAAAACCACTCTTACCGCCGCTTTGACCATGGCTTTGAGCAAAGCCCCAAAGAAATACGACGAAATTGACGCTGCCCCAGAAGAGCGAGCTCGTGGTATTACAATTAATACAGCTACCGTCGAGTACGAGACTGAGAGCCGACATTACGCTCATGTTGATTGTCCTGGCCATGCTGATTATGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGAGCAATTTTGGTGGTTTCCGGTGCTGATGGCCCAATGCCACAGACGAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGATGAGGAGCTTCTGCAGCTTGTGGAATTGGAGATGCGTGAGTTGCTTTCTTCCTATGAATTCCCAGGTGATGATGTTCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAATAACAATATAGCTAGAGGAGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGCTATATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTTTCTATTACTGGTCGTGGTACTGTGGCTACAGGGCGTGTTGAAAGGGGAACTGTTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACAGTAACAGGAGTGGAGATGTTTCAGAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGTTTGTTGCTTAGAGGTGTTCAGAAGGCTGATATCCAAAGAGGGATGGTTTTAGCCAAGCCTGGCACTATCACCCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCCGGTTACAGACCGCAATTCTATATGAGGACGACCGATGTCACTGGTAAGGTGTCTTCGATTATGAACGACAAGGATGAGGAGTCGAAAATGGTTATGCCTGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCGGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGTAAGACCGTTGGTGCTGGTGTGATTCAATCAATAATCGAGTGA 1434 45.54 MAAISLASASTSSKLVFPHPSSSSSSSSPSSSLLVKPSSVTNLSSSFLNPSSIRPLSLSSPSVNRPRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLQLVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANNNIARGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFSAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26309646 26311079 + Lsi06G015920.1 Lsi06g01592 666322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01592 477 Gene3D Translation factors 416 476 - -
Lsi06g01592 477 MobiDBLite consensus disorder prediction 1 35 - -
Lsi06g01592 477 Pfam Elongation factor Tu C-terminal domain 376 475 IPR004160 -
Lsi06g01592 477 CDD EFTU_III 378 472 - -
Lsi06g01592 477 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Lsi06g01592 477 SUPERFAMILY Translation proteins 283 379 IPR009000 -
Lsi06g01592 477 Pfam Elongation factor Tu domain 2 303 371 IPR004161 GO:0005525
Lsi06g01592 477 PRINTS GTP-binding elongation factor signature 162 173 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 PRINTS GTP-binding elongation factor signature 199 208 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 Gene3D - 74 281 IPR027417 -
Lsi06g01592 477 Hamap Elongation factor Tu [tuf]. 73 477 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lsi06g01592 477 PANTHER ELONGATION FACTOR TU-RELATED 25 477 - -
Lsi06g01592 477 TIGRFAM small_GTP: small GTP-binding protein domain 85 213 IPR005225 GO:0005525
Lsi06g01592 477 Pfam Elongation factor Tu GTP binding domain 82 279 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 Gene3D Translation factors 284 412 - -
Lsi06g01592 477 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 376 476 IPR009001 -
Lsi06g01592 477 PANTHER ELONGATION FACTOR TU 25 477 - -
Lsi06g01592 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 297 IPR027417 -
Lsi06g01592 477 TIGRFAM EF-Tu: translation elongation factor Tu 74 477 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lsi06g01592 477 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 282 IPR000795 GO:0003924|GO:0005525
Lsi06g01592 477 CDD EF_Tu 83 281 IPR041709 -
Lsi06g01592 477 CDD EFTU_II 289 375 IPR033720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01592 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 844.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02316 Lsi-Chr2:29753077 Lsi06g01592 Lsi-Chr6:26309646 8.26E-180 dispersed
Lsi06g01592 Lsi-Chr6:26309646 Lsi09g01132 Lsi-Chr9:18223748 2.82E-46 dispersed
Lsi06g01592 Lsi-Chr6:26309646 Lsi02g01701 Lsi-Chr2:22777519 7.14E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01592 Lsi_Chr06 FPKM 37.118076 37.813473 18.765755 16.679985 9.392608 9.880671 12.748786 30.503059 28.547043 30.909628