Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01595 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGCTAAATGGTTGGTTGATCCCAAGCATCTCTTCGTCGGACCTAGAATTGGGGAAGGAGCTCACGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGTTGATGAGGTTGCGAAGAAAGAGGCTCGGTTTGCTCGAGAGGTTGCAATGTTGTCTAGAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGCCCACGGTGCTTGGACACATGTTTGGCAGTTGGTTTTGCACTTGATATTGCTCGTGCTATGGAATGCCTTCACTCACATGGCATCATACATCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCGAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCCGAGGAACTGGCTATCGTTCTAACATCGTGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATTATCCAAATGTTACTTAATTACCTTTATACTATTTCACCCCCTGAGCCGATGATTCCTTCCCGATTTTTCTCTTCTGAGAACACGGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGACTCAGGGGACACTCCAAAAGCTAAAATGGAAAAAAGTCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA 1062 44.82 MEAGSRFYSATDEFRLEAKWLVDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETVDEVAKKEARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTCLAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIVLTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRFFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMEKSPRGCFFCSNDCY 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26332348 26336169 - Lsi06G015950.1 Lsi06g01595 666325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01595 353 CDD STKc_MAP3K-like 33 287 - -
Lsi06g01595 353 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01595 353 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 328 - -
Lsi06g01595 353 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Lsi06g01595 353 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Lsi06g01595 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lsi06g01595 353 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01595 353 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Lsi06g01595 353 Pfam Protein tyrosine and serine/threonine kinase 31 287 IPR001245 GO:0004672|GO:0006468
Lsi06g01595 353 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524
Lsi06g01595 353 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672|GO:0006468
Lsi06g01595 353 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672|GO:0006468
Lsi06g01595 353 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672|GO:0006468
Lsi06g01595 353 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Lsi06g01595 353 MobiDBLite consensus disorder prediction 314 337 - -
Lsi06g01595 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01597 Lsi-Chr2:21848918 Lsi06g01595 Lsi-Chr6:26332348 2.96E-29 dispersed
Lsi03g02273 Lsi-Chr3:33657490 Lsi06g01595 Lsi-Chr6:26332348 9.11E-155 dispersed
Lsi06g01595 Lsi-Chr6:26332348 Lsi11g00832 Lsi-Chr11:10353365 2.37E-68 dispersed
Lsi06g01595 Lsi-Chr6:26332348 Lsi03g01347 Lsi-Chr3:24355166 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83753 PF07714 PK_Tyr_Ser-Thr 6.60E-57 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01595 - - csv:101223021 697.967