Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01599 ATGGAAGCTCTGGCGCTTCCTTCCCTGAATTCACTCACTATTTCCTGTTCTAATTTGCAGAAAGGCAGTTTTGCCAACTTCCCCAGAAGATTGCATCACTGTAAATTTTACCAACAATCCACCTTCAAGTTCAATGGTACCCACCGCTCTCATTTCAATGTTATCAAAATGCAAAGTGATAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATCCGAGAAGGAAAAGTGAAAGTTCTGATGCCAAGGGAAGCTGGTTATGCCATTCAGCTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTATAGAACACAAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGATGTTGATGACAAACTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTTATGATGGGGGGTTGGTGGAGTGGTGTGGCTACAGTATCCTACAATAGCCGATTCTTATCAGAAGTTCAAGAGAAGTTTCCAAAAGATGCTGACCTTATTCTTGCATGCCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTATAGAAACCTTTTCTGGGTTCAAGGGGGTCTAGATGCTGCTGAAGAAGAGGATCTTGTCAGAGAAGGTCCGCAACCTTTAAAATTCGCTGGGATTGGTGGGCTTTCAGAATTCCTTGGTTGGACAGATCAACAAAGGATGGCTGGTGCAAAAGAAGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTTCTTGCCGCCGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATGTTCAGGAATTACGCAGTCTTCTTAGATTGAACTCCTTTGCAGCTAACAAATCTGTGTACTTGAATATGGAGTGGGCACAGCTATTTGGAGCTTCCTCTCGACATTTAGTCGACCACAGTGAGATGGAGATGAACCTTTATGAGGGTGAATGCATGGTAATCACTGTTAAGCTAAACCCGTATATATTAGTGTACATCAATGAAAGGACCGAGGTCACACCTTCTGATCCTCAAAGTCAGCCCGTTGCCGGAGATTGTTACGCCGCCAGCACAACCGGTCGCCGTTACTTCCCACTGCCTAAGAATTTCATGATGATGAATCCAAGCATTCTTCCCATCGGCTACACCTTCTCTCCCACCAATGAAGAATTATTGAGTTTCTATCTTTTCCACAAGGTTGTCGGAGATTTCGTTCCTCCAATTATGTTGCCAGTCATTGACATTTATAGTCAAGAACCTTCTCAAATATGGCAACAATGCGGAGGGATTGAAGAGCAAGACATCTACTTTTTTACCAGTCTCAAGAAGAAAAAAAGTCGTGTTATTAGGAAAGTTGGCTCCAATGGCGCCACTTGGAGTGGTGAGAACAAGCCTAATAAAGTGTTTTCTTCGGTAAATAATATCATGATGGGTAGCATTAAACGATTTCATTATGAAAATTCTAAAGCGAAGTTGGATGATAATTATTGCTCTTGGATCATGCACGAGTACACACTTGATCCTTCTTTCGTGCCAAAAGGGGTATTACATGATTCCTTTGTACTTTGTATGCTTCGAAAAAAAGTTTTAAAACAAGAGAAAAGGACATTCTCCACATTAATACAACCATCATTTGCCCCTAATTGCCCAAGACCTACAACAACACAAACGGAACAAGTGTATGATGATCCAAATCCCAAACGCATAAAAGTGGACGAACAAGTAGTTGGTTTAGTAAAAGAACTTTGCATCGATGGGGTTAATTTTGAAAACCAATTTTGTGTTGATACGCAACGATTTACTAAACAACTTATGCATGGATACAATACTTTGGAATCACCTCACATTCAGGAGGATATCATTGACAACGTGGAACCTGTTAATAAATGTCCAACAATGTCAATGGAATCACATGATCGATATGATCCAATTGACATACCAATGTTGGTCAAAGATATCGAGATGAGACTTCAACAAATATCCAACTATGTGTCACCTTCAAATGGAGAAAAAGATTCAAAGTATGATCATGAAATATGTCAAACAAAAGCACTTGATCAAAATAATTCAATTGACGAAGACGCATTATTTGCAAAAGAAATCGAGATGGCACTTGAACAATGCAACGATGTGTCACCTTCAAATGGAGAAAAAGATTCAAAGTATGATCATGAAATATGTCCAACAATGCAAACGAAAGCACTTGATCAAGATAATTTAATTGACGAAGACGCATTATTTGCAAAAGAAATCGAGATGACACTTGAACAGTGCAACGATGTGACACCTTCAAATGGAGAAAAAGATTCAAAGTATGATCATGAAATATGTCCAACAATGCAAATGAAAACACTTGATCAAGATGATTCAGTTGACGAAGACACATTATTTGCAAAAGAAATCGAGATGGCACTTGAACAATGTAACGATGTGATACCTTCAAATGAAGAAAAAGATTTAAGTTATGATAATGAATGGTATTGGAGTGGTCGTCAAACTTCTTCATAG 2562 40.16 MEALALPSLNSLTISCSNLQKGSFANFPRRLHHCKFYQQSTFKFNGTHRSHFNVIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLMPREAGYAIQLSDKTLLDVRPSIEHKKAWVKGSTWIPIFDVDDKLDPGTLSRKVTSFMMGGWWSGVATVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACELLYNAGYRNLFWVQGGLDAAEEEDLVREGPQPLKFAGIGGLSEFLGWTDQQRMAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYVQELRSLLRLNSFAANKSVYLNMEWAQLFGASSRHLVDHSEMEMNLYEGECMVITVKLNPYILVYINERTEVTPSDPQSQPVAGDCYAASTTGRRYFPLPKNFMMMNPSILPIGYTFSPTNEELLSFYLFHKVVGDFVPPIMLPVIDIYSQEPSQIWQQCGGIEEQDIYFFTSLKKKKSRVIRKVGSNGATWSGENKPNKVFSSVNNIMMGSIKRFHYENSKAKLDDNYCSWIMHEYTLDPSFVPKGVLHDSFVLCMLRKKVLKQEKRTFSTLIQPSFAPNCPRPTTTQTEQVYDDPNPKRIKVDEQVVGLVKELCIDGVNFENQFCVDTQRFTKQLMHGYNTLESPHIQEDIIDNVEPVNKCPTMSMESHDRYDPIDIPMLVKDIEMRLQQISNYVSPSNGEKDSKYDHEICQTKALDQNNSIDEDALFAKEIEMALEQCNDVSPSNGEKDSKYDHEICPTMQTKALDQDNLIDEDALFAKEIEMTLEQCNDVTPSNGEKDSKYDHEICPTMQMKTLDQDDSVDEDTLFAKEIEMALEQCNDVIPSNEEKDLSYDNEWYWSGRQTSS 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26373542 26383982 - Lsi06G015990.1 Lsi06g01599 666329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01599 853 Gene3D - 88 255 IPR036873 -
Lsi06g01599 853 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 291 IPR044664 -
Lsi06g01599 853 ProSiteProfiles Rhodanese domain profile. 101 224 IPR001763 -
Lsi06g01599 853 SMART rhod_4 91 221 IPR001763 -
Lsi06g01599 853 Gene3D NAC domain 405 550 IPR036093 GO:0003677|GO:0006355
Lsi06g01599 853 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 89 215 IPR036873 -
Lsi06g01599 853 SUPERFAMILY NAC domain 389 546 IPR036093 GO:0003677|GO:0006355
Lsi06g01599 853 ProSiteProfiles NAC domain profile. 396 546 IPR003441 GO:0003677|GO:0006355
Lsi06g01599 853 CDD RHOD 106 214 - -
Lsi06g01599 853 Pfam No apical meristem (NAM) protein 397 524 IPR003441 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01599 - - - csv:101221836 546.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02213 Lsi-Chr3:33159178 Lsi06g01599 Lsi-Chr6:26373542 1.37E-32 dispersed
Lsi06g01599 Lsi-Chr6:26373542 Lsi03g02131 Lsi-Chr3:32475575 2.64E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g00194 . 1218 1505 Sulfurtransferasese/Rhodanese AT1G79230 59.5 7.0e-105 377.5
Lsi05g00194 . 1218 1468 Sulfurtransferasese/Rhodanese AT1G16460 60.5 1.9e-84 309.3
Lsi02g00153 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 62.6 2.3e-89 325.9
Lsi02g01151 . 7 649 Sulfurtransferasese/Rhodanese AT1G09280 60.2 7.6e-219 756.9
Lsi04g01009 . 108 495 Sulfurtransferasese/Rhodanese AT2G40760 69.2 1.6e-150 529.6
Lsi03g01503 . 409 714 Sulfurtransferasese/Rhodanese AT1G17850 50.4 2.5e-92 336.3
Lsi03g02213 . 36 216 Sulfurtransferasese/Rhodanese AT3G08920 64.6 5.5e-66 247.7
Lsi06g01599 . 1 290 Sulfurtransferasese/Rhodanese AT4G24750 67.2 6.5e-110 394.0
Lsi10g01098 . 67 260 Sulfurtransferasese/Rhodanese AT5G19370 60.0 3.0e-62 235.7
Lsi05g00576 . 113 462 Sulfurtransferasese/Rhodanese AT5G55130 66.5 2.2e-131 465.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25556 PF02365 NAM 3.00E-17 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01599 Lsi_Chr06 FPKM 12.619329 21.184587 11.803244 11.602819 3.7397 2.799502 3.246001 2.417286 3.782105 3.214123