Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01600 ATGGGTGGGAAAAGTTCTAAGCATGGAAGTTCAAGGCGCATTTTGTCTAGTCGATCGAACTCGCAGCAGTGGAGTCAATACGGTTATCCGCAGTCGCCATACGATCAATCAAGAAGCACGCCACAGTATCGATATGCACCTCCAACTCCTAGCTATGGTGGAACTCAGGCCCCTGAGACAAGAAAGAGGCTGGAAAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACCGAGGCATTGGCTCGTGCTGGCCTGGAGTCTTCGAATCTTATCGTCGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTGCGAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATTGCAATTATTGGGCAGACATTATCTTCCTTTGATGAGGATAATATGATCCCATGCTTTGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGATGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTCGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGTGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTCGATACCGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGAATACCCCTTGTCAATTATACTAGTCGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCCTTCGATAACTTCCAATTCGTGAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGGAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCAACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAAAAAACCTCAAACTCAAGCAGTTCTCGCCCAATCCCAACCTCATTTGGTGGAGTTGCTCCTGCCCGAACCGCACCTCCTCTAAGTTCGGTTTCTGATGCCCATGCTTGTCCCATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGTGGACATCAGACATGCTGTGAATGTGGACAGGACCTTCAGCTGTGCCCCATATGCCGAAGCTTTATTGACACTAGGATAAAGCTTTATTAG 1299 45.34 MGGKSSKHGSSRRILSSRSNSQQWSQYGYPQSPYDQSRSTPQYRYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPIPTSFGGVAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQLCPICRSFIDTRIKLY 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26387254 26390967 + Lsi06G016000.1 Lsi06g01600 666330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01600 432 Coils Coil 61 81 - -
Lsi06g01600 432 SUPERFAMILY vWA-like 94 276 IPR036465 -
Lsi06g01600 432 PANTHER RING-FINGER PROTEIN 1 432 - -
Lsi06g01600 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 432 IPR013083 -
Lsi06g01600 432 MobiDBLite consensus disorder prediction 338 371 - -
Lsi06g01600 432 SUPERFAMILY RING/U-box 381 427 - -
Lsi06g01600 432 MobiDBLite consensus disorder prediction 350 366 - -
Lsi06g01600 432 MobiDBLite consensus disorder prediction 1 46 - -
Lsi06g01600 432 SMART VWA_4 92 295 IPR002035 -
Lsi06g01600 432 Pfam Zinc finger, C3HC4 type (RING finger) 387 426 - -
Lsi06g01600 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Lsi06g01600 432 Pfam Copine 117 330 IPR010734 -
Lsi06g01600 432 CDD RING-HC_RGLG_plant 389 432 IPR045317 GO:0061630|GO:0070534
Lsi06g01600 432 PANTHER COPINE FAMILY PROTEIN 1 1 432 - -
Lsi06g01600 432 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01600 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00512 Lsi-Chr1:4188821 Lsi06g01600 Lsi-Chr6:26387254 1.53E-133 dispersed
Lsi01g01169 Lsi-Chr1:9918987 Lsi06g01600 Lsi-Chr6:26387254 3.30E-146 dispersed
Lsi03g01338 Lsi-Chr3:24271270 Lsi06g01600 Lsi-Chr6:26387254 1.21E-156 dispersed
Lsi04g00627 Lsi-Chr4:5738272 Lsi06g01600 Lsi-Chr6:26387254 0 dispersed
Lsi06g01600 Lsi-Chr6:26387254 Lsi10g01505 Lsi-Chr10:19301721 2.53E-116 dispersed
Lsi06g01600 Lsi-Chr6:26387254 Lsi02g01606 Lsi-Chr2:21933503 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01600 Lsi_Chr06 FPKM 672.668396 747.495544 41.190556 36.417728 70.030022 87.462387 74.348732 0.0 0.069559 0.0