Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01602 ATGTATAAAGCCTTCACGTCGAGAAAATTCCCTCTCCAACTTCCGGGTTCAACCAATTTCATCAGATTTCGTTACCCATTTCCTCTAAATCTTCATTTTCTTCCATTTATCTTTCCTCAGTGTGTTTCCAGGCCAAAGTTTGAGGCTAAGTTTAGAGGGTTTTCCAGTTTCAAGTCGAAGATGACGATCACGACCTTGCCCAGCATCAAAGATGGGCGCCTCATCGTCGGCGACAAGGTGGTTCTGACAGACGTTCCGGCAAATGTTGGTGTCTCTCCGGTGACCCACCGTTCAGCTTTCATCGGCGCCACTTCTTCTACTTCAAGCTCTCGTCATCTGTTTTCCATCGGAGTTCTTGAAAGGCACGAGTTTTTATGCCTATACAGATTCAAAATGTGGTGGATGATACCAAGACTTGGGAAATCAGGCAGTGATGTTAATGTGCAAACTTCAAAAGCAATGGAAGCTGTATTTATAAACTCAGGAGATAATCCTTTTGAGGTCATTACAGATTCTATGAAGGTATTGGAAAAGGTTAAAGGAACTTTTAGTCGTATCGACAACAAGAAGGTGATCAAAATTCCTTCACATCTAGACTGGTTTGGTTGGTGCACTTGGGATGCATTTTACACTGATGTTAATCCACAGGGAATCAAGGAAGGTCTCCAGAGTTTCTCGGCTGGAGGTCTTTCCCCGAAATTTCTGATTATTGACGATGGATGGCAAGAGACTGTAAATGAATATCGCAAAGAAGGTGAACCAGATATCGAAGGGATACAGTTTGCTACAAGACTAGTGGACATCAAAGAGAACAAGAAATTCAGGGGTTCTGGTTTAGATGATTCTCTACATGAGCTTGTTCATAGCATCAAAGAGAAATATGGGCTTAAATATGTCTATGTATGGCATGCTTTAGCTGGTTACTGGGGAGGAGTGCTCCCATCTTCTGAATCAATGAAGAAGTATAATCCTAAGATCGAATATCCCATCCAATCACCGGGCAACGTTAGCAATCTTAGAGATATTGTCGTGGACGTCTTGGAGAAATACGGACTTGGAGTCATCAACCCTGAGAAAATTTATGAGTTCTACAATGATCTCCATGGTTATCTTGCGAGCATTGGTGTTGATGGGGTCAAGGTGGATGTCCAAAACATAATGGAGACCTTAGGTACAGGATATGGTGGACGTGTGTCGATCACTAGACAGTATCAAGAAGCATTGGAACAATCAGTTGTAAGAAACTTCAAAGAAACTAATCTGATTTGTTGTATGAGTCACAACTCAGACTCAATATACAGTTCAAAGAAGAGTGCAGTTGCTAGAGTGTCAGAGGACTTCATGCCCAGAGAGCCAACATTTCAGACTTTACATGTTGCTGCAGTGGCTTTTAATAGTCTTCTATTGGGGGAGATTGTTGTGCCAGATTGGGACATGTTTCAAAGCAAACATGAAACAGCTGAATTCCATGGTGCAGCAAGAGCATTGGGTGGTTGTGCTGTGTATGTAAGCGACAAGCCCGGGAATCACGATTTCAAAATACTAAGGAAGCTAGTGTTGCCCGATGGATCAGTCCTAAGGGCAAGACATGCAGGTCGGCCTACTCGAGACTGCTTATTTCAGGACACCGTGATGGATGGAAAAAGTGTGCTGAAAATATGGAACTTGAATAAGTTAACCGGGATCGTAGGCGTCTTTAATTGCCAAGGAGCAGGACATTGGCCATTGATGAAAGTAGCTCAGAATGAACATACCTCAACTTGTACAAAATTAACTATCACAGGTAGTGTCTGTCCAAATGATGTAGAATTTCTTGAAGATGTTGCAGGTGAAAACTGGGATGGAGATTGTGCAGTTTATGCCTTCAACTCAGGATCTCTTTCTAAATTGAAACGAAAAGAAAGGCTTGAAGTTGGATTGAGAACTTTAGAGTGTGAGATTTATACCGTAGCTCCAATCAGGGTTTTCGGTAATGGCGTTCACTTCACGCCGATAGGATCGCTCGACATGTATAATTCAGGAGGAGCTATTGAAACTCTAAGTCATTGTATGGAGGATCTTTCACAATGTACCCTCAAAATGACAGGACGATTCTGTGGCAGATTCGGAGCCTACTCGAGCTTGAAACCGAGCCGATGTGTAGTTGAGATGAAAGAAGAGGAGTTTAGCTATGAATCTGGAAGTGGACTATTAACAGTCAAACTTGAAGATGGTTCTATTTCAAGAGAGATACAGTTCGTATATTGA 2247 42.28 MYKAFTSRKFPLQLPGSTNFIRFRYPFPLNLHFLPFIFPQCVSRPKFEAKFRGFSSFKSKMTITTLPSIKDGRLIVGDKVVLTDVPANVGVSPVTHRSAFIGATSSTSSSRHLFSIGVLERHEFLCLYRFKMWWMIPRLGKSGSDVNVQTSKAMEAVFINSGDNPFEVITDSMKVLEKVKGTFSRIDNKKVIKIPSHLDWFGWCTWDAFYTDVNPQGIKEGLQSFSAGGLSPKFLIIDDGWQETVNEYRKEGEPDIEGIQFATRLVDIKENKKFRGSGLDDSLHELVHSIKEKYGLKYVYVWHALAGYWGGVLPSSESMKKYNPKIEYPIQSPGNVSNLRDIVVDVLEKYGLGVINPEKIYEFYNDLHGYLASIGVDGVKVDVQNIMETLGTGYGGRVSITRQYQEALEQSVVRNFKETNLICCMSHNSDSIYSSKKSAVARVSEDFMPREPTFQTLHVAAVAFNSLLLGEIVVPDWDMFQSKHETAEFHGAARALGGCAVYVSDKPGNHDFKILRKLVLPDGSVLRARHAGRPTRDCLFQDTVMDGKSVLKIWNLNKLTGIVGVFNCQGAGHWPLMKVAQNEHTSTCTKLTITGSVCPNDVEFLEDVAGENWDGDCAVYAFNSGSLSKLKRKERLEVGLRTLECEIYTVAPIRVFGNGVHFTPIGSLDMYNSGGAIETLSHCMEDLSQCTLKMTGRFCGRFGAYSSLKPSRCVVEMKEEEFSYESGSGLLTVKLEDGSISREIQFVY 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26398713 26404406 + Lsi06G016020.1 Lsi06g01602 666332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01602 748 PANTHER - 53 150 IPR008811 -
Lsi06g01602 748 SUPERFAMILY (Trans)glycosidases 198 516 IPR017853 -
Lsi06g01602 748 Gene3D Aldolase class I 198 517 IPR013785 -
Lsi06g01602 748 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 145 748 - -
Lsi06g01602 748 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 53 150 - -
Lsi06g01602 748 PANTHER - 145 748 IPR008811 -
Lsi06g01602 748 Pfam Raffinose synthase or seed imbibition protein Sip1 145 734 IPR008811 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01602 - - - cmo:103502361 1158.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00999 Lsi-Chr6:20019984 Lsi06g01602 Lsi-Chr6:26398713 0 dispersed
Lsi06g01602 Lsi-Chr6:26398713 Lsi02g00398 Lsi-Chr2:3378647 4.41E-142 transposed
Lsi06g01602 Lsi-Chr6:26398713 Lsi03g01364 Lsi-Chr3:24574976 3.99E-146 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g865 . . . . . . . . . . Cma10g00084 . Car10g00076 . Sed12g2486 . . Bhi02g00589 Tan09g2318 Cmetu02g1514 . Hepe09g0090 . . . . . . . . . . . Cone13ag0187 . . . . . . . . . . . . . . Cmo10g00086 . . . . . . Cpe18g00876 . . . . . . . . . . . . . . Lsi06g01602 Csa01g00095 . Cme02g02025
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012908 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01602 Lsi_Chr06 FPKM 1.85554 1.150293 2.213287 2.637781 3.732091 5.009882 3.914065 4.211615 4.234416 3.628931