Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01603 ATGGCTTCTACTTCAGCCACTTCCATTTTGAAGCCCTTATCCAAGCCAGATTCTTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAATCTCTCCTCTTCTCATTCTTTACTCTTTTCCCCCTCTAAGAAGAAACCCCATCTTCCTTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGACAATGAAGAAGCCGAGGACGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGGTGAAGATGATGGAGGAAGTGAGGCCGAAGGAGAGGAGGAAGAAGGTCCTTATGAAGAGCCAAATGAAGACGCTAAATTGTTTGTTGGGAATTTGCCCTATGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGACTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGCTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTCCAACCCGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGTGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGACTCCGAACTCGATAACACTGAACACAAATGATGAAAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA 1002 46.81 MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHSLLFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGEDDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQTPNSITLNTNDESLEGRAIRVNVAEEKPRRNF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26406577 26409338 + Lsi06G016030.1 Lsi06g01603 666333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01603 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 305 IPR000504 GO:0003723
Lsi06g01603 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Lsi06g01603 333 SMART rrm1_1 238 311 IPR000504 GO:0003723
Lsi06g01603 333 SMART rrm1_1 144 217 IPR000504 GO:0003723
Lsi06g01603 333 SUPERFAMILY RNA-binding domain, RBD 138 232 IPR035979 GO:0003676
Lsi06g01603 333 PANTHER OS02G0815200 PROTEIN 1 332 - -
Lsi06g01603 333 MobiDBLite consensus disorder prediction 78 113 - -
Lsi06g01603 333 Gene3D - 82 228 IPR012677 -
Lsi06g01603 333 MobiDBLite consensus disorder prediction 63 77 - -
Lsi06g01603 333 SUPERFAMILY RNA-binding domain, RBD 230 331 IPR035979 GO:0003676
Lsi06g01603 333 PANTHER RIBONUCLEOPROTEIN 1 332 - -
Lsi06g01603 333 CDD RRM_HP0827_like 144 221 - -
Lsi06g01603 333 Gene3D - 229 332 IPR012677 -
Lsi06g01603 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Lsi06g01603 333 MobiDBLite consensus disorder prediction 56 140 - -
Lsi06g01603 333 MobiDBLite consensus disorder prediction 114 138 - -
Lsi06g01603 333 CDD RRM_HP0827_like 238 326 - -
Lsi06g01603 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 327 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01603 - - - csv:101221130 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02023 Lsi-Chr3:31600225 Lsi06g01603 Lsi-Chr6:26406577 2.15E-56 dispersed
Lsi05g01774 Lsi-Chr5:25057286 Lsi06g01603 Lsi-Chr6:26406577 6.36E-43 dispersed
Lsi06g01603 Lsi-Chr6:26406577 Lsi07g01183 Lsi-Chr7:17339455 1.88E-22 dispersed
Lsi08g00660 Lsi-Chr8:14945716 Lsi06g01603 Lsi-Chr6:26406577 4.17E-08 dispersed
Lsi06g01603 Lsi-Chr6:26406577 Lsi02g02602 Lsi-Chr2:32407727 1.03E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01603 Lsi_Chr06 FPKM 0.93595 1.156736 1.907117 1.882129 2.24501 2.054677 2.546696 2.538448 1.996668 2.547357