Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01605 ATGGCAGCTTACACTCGTCCGGTTCCGAAAACGCATCAGCTGGCCAAAAATGACAGGAGAATGTTATCTGCCTCTGATGACAATGCAATGACAAAGCAAGTTCTCGCAACTCATGCTCCAGACGGGCGTGAGGTCGATGTCAAGCCCATTCTGCTCATCGTCGAAGAAGTTATCCGTCGTGCCACTCCTGATATTGGAAAAGTGCTTGATGGCAATGGCCAGCATAAGGATATGTTGGAGGACCAAATCAGTTCAGCAGAGATGGATGGGATGCTTGAACCGCTGGCTCATGTCGTACAAAAAGTCGGCGCCGAGCTAGCATGTAAGTGCTCAGGTGGAGATGCACATGCCACTACTATGGCTATACTGAACTTACTGTCAAATTACTCATGGGATGCAAAAGTGGTGATTACAATGGCTGCCTTTGCTGTGACCTATGGACAGTATTGGCTTTTGGCTCAACTTTACACAACCAATATGCTAGCCAAGGCTCTGGCTCTACTGAAGCAATTGCCCGATGTTATAGAGCATTCAAATTCCTTGAAACCACAGTTCGACGCGCTTAGCAAACTCATCACAGCTATATTGAATGTAACGAAGTGCATTGTCGAGTTCACCGAGTTGCCATCTCACTACATTTCACCGGACACGCCTGCAATGTCGGTTGCCCTTGCTCATTTTCCTACAGCTGCCTATTGGACCATCAAAAGTGTGGTCGCCTGTACGTCTTTGATTGAAAACCTCGTCAGCTTGAGCCATGAGCGAATTATGTCGACTACCGAAGTATGGGAACTTTCGAGCTTGGCTCACAAGGAAACAAATATACACGAACATCTCCGGAAGCAACTGGATCTTTGCTTACAATACATAGATGAGAAAAGGCATTTGGAGGCCTATCAGAATCTTGTGAGAATTTCAGAAACTCTTCACTTAGACAATATGAAGTTTATAAGGGCCTTGATTTCTACAAGAGAAGACATACAGCCTCTCTATGATGGCACCTCCAAAATGACGGTTCACCTTGAAATACTAAAGAGGAAACATGTGTTGCTGTTGATATCAGATCTTGATATCTCCCATGAAGAGGTTATGATTCTTGACAACTTATTCAAAGAATCGCAGCAGCGACCAGAAATTCGATACGAGATAGTGTGGATACCGATTATCGATCAATCAATCCAACCGCACAACAAGAACAAACACAAGTTTGAGGAGCTGAAACAGCTGATGCCATGGTTCAGTGTTTGTGACCCTTCAATAATTGAGCTATCAGTCATAAGATACATCAAAGAGAAATGGAACTTCAAAAAGAAAACCATTTTAGTGGCATTGGATCCACAAGGAAAAGTTTCTTCCACCAATGCCCTTCACATGCTTTGGATATGGGGAAACCTAGCTTTCCCTTTCACTTCAGAAAGAGAAGAAGCACTCTGGAAAACAGAGAGCTGGAGGCTCGAACTTCTCATAGATGGCATAGATTTATCCATTCTCGATTGGGCTGCAGAAGGAAGATACATATGTCTATATGGAGGGGAAGACACAGAGTGGATCAAGGAATTCACAAGCAAAACAAAACAAGTAGCAGAAGCAGCAAAAGTAGACTTACAAATGGCGTATGTAGGGAAGAACAATGCCAAAGAACGCGTGAGGAAAATCAGTATCATGATTTCAGACAACAAGCTAAGCCATTACTGGCCAGATTCAACATTGGTATGGTTCTTCTGGGCAAGATTAGAGAGCATGATGTACTCAAAGTTAAACTATGGAAAAACAGTTGAAAATGACCAAATAATGCAAGAGATTATGACCCTTTTGAGCTTCGATGGAAGTGATAAAGGATGGGCCATTTTCTTTGGAAGAGGAGGGGAAATGACAAGAGCAAAAGGGGAAACTGCTCTGAGTTGCATATTGGCATTCGATCAGTGGAAAGATGAGGTGGAAGAGAAGGGTTTTCTCAAGGCATTGGCTGAGTATTTGCAGCAACTTCGAACCCCACATCACTGCAACCGCCTCATTCTGCCGGGACTCGCCGGAAACATACCGGAAAATGTGGTGTGTGCAGAGTGTGGAAGGGCAATGGAGAAGTATCTGATGTACCGATGCTGTGTTGAATGA 2115 43.97 MAAYTRPVPKTHQLAKNDRRMLSASDDNAMTKQVLATHAPDGREVDVKPILLIVEEVIRRATPDIGKVLDGNGQHKDMLEDQISSAEMDGMLEPLAHVVQKVGAELACKCSGGDAHATTMAILNLLSNYSWDAKVVITMAAFAVTYGQYWLLAQLYTTNMLAKALALLKQLPDVIEHSNSLKPQFDALSKLITAILNVTKCIVEFTELPSHYISPDTPAMSVALAHFPTAAYWTIKSVVACTSLIENLVSLSHERIMSTTEVWELSSLAHKETNIHEHLRKQLDLCLQYIDEKRHLEAYQNLVRISETLHLDNMKFIRALISTREDIQPLYDGTSKMTVHLEILKRKHVLLLISDLDISHEEVMILDNLFKESQQRPEIRYEIVWIPIIDQSIQPHNKNKHKFEELKQLMPWFSVCDPSIIELSVIRYIKEKWNFKKKTILVALDPQGKVSSTNALHMLWIWGNLAFPFTSEREEALWKTESWRLELLIDGIDLSILDWAAEGRYICLYGGEDTEWIKEFTSKTKQVAEAAKVDLQMAYVGKNNAKERVRKISIMISDNKLSHYWPDSTLVWFFWARLESMMYSKLNYGKTVENDQIMQEIMTLLSFDGSDKGWAIFFGRGGEMTRAKGETALSCILAFDQWKDEVEEKGFLKALAEYLQQLRTPHHCNRLILPGLAGNIPENVVCAECGRAMEKYLMYRCCVE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26413945 26416853 + Lsi06G016050.1 Lsi06g01605 666335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01605 704 Pfam Sieve element occlusion N-terminus 25 310 IPR027942 -
Lsi06g01605 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 703 - -
Lsi06g01605 704 Pfam Sieve element occlusion C-terminus 472 702 IPR027944 -
Lsi06g01605 704 MobiDBLite consensus disorder prediction 1 25 - -
Lsi06g01605 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 703 IPR039299 GO:0010088
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01605 - - - bhj:120071828 1315.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00468 Lsi-Chr5:5920115 Lsi06g01605 Lsi-Chr6:26413945 0 dispersed
Lsi06g01605 Lsi-Chr6:26413945 Lsi09g01265 Lsi-Chr9:20312782 3.16E-70 dispersed
Lsi06g01605 Lsi-Chr6:26413945 Lsi08g01636 Lsi-Chr8:24243826 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g868 . . . . . . . . . . . Cma11g00060 . Car11g00054 . . Cpe04g01592 Bhi02g00582 . . . . . . Cla06g01711 Cam06g1900 Cec06g1949 Cco06g1953 Clacu06g1856 Cmu06g1797 Cre06g2612 . . Cone13ag0189 . . . . . . . . . . . . . . . Cmo11g00062 . . . . . . . . . . . . . . . . . . . . Lsi06g01605 Csa01g00092 Chy02g02629 Cme02g02028
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005147 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 3 1 4 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01605 Lsi_Chr06 FPKM 32.789837 33.728989 24.153486 26.600876 24.217329 23.066212 26.148094 33.37109 31.876282 36.073479