Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01606 ATGGCTTCATCTTCCTCCAAACTCCTTCCATTTTTGGCTTTTCTCTCCCTCCTTCTCCATGTCCATGCCCGACTGAACCTTGATCCTTCAGATCTCAGAGCCTTTTCTATCATCAAAAATGACTTGGGCATTGACGGTCAACTCTCCCCCTCCCCATGCCACAACGCCGGTGTGTTCTGCGAGCGGCGGCTCTCCGACAACGGCACTTATGTTTTGCGGATCACCAGGCTCATTTTCAACTCCAAAGGTCTCGCTGGTTCACTTTCTCCGGCTATCGGGCGGCTCACGGAGTTGAAAGAGCTTACGGTTTCTAATAATCGCCTCGTTGACCAAGTACCTGCCCAAATCGTTGACTGCCGGAAACTGGAAATTCTCGATCTCCGAAACAACCAGTTTTCTGGAAAAGTTCCTTCTGGATTGTCCTCGCTGATTCGCCTTCGAGTCATCGATCTTTCGTCAAATAAATTATCGGGGAGTTTGGATTTCTTGAAGCATTTCCCCAACTTGGAAAGTCTGTCCATAGCCAATAATTACTTCACAGGAAAGATCCCAGCTTCAATTCGTTCTTTTCGCAATCTTCGAGTCTTCAACTTCTCTGGAAATCGCCTTCTCGAAACTTCAGCCCCTATCATGAAGAGTGTTGAGTTCTATTCGGCTACAGAAGTTCCCAAGCGTTATAAGTTAGCTGAGAATTCCAGTACGAAAGGCACGCACAGAGCCGCCGCTAGAGCGCCAACTTCGAGTGCTCCAGCTGCATCTCCCGCGACACCGCCTACTCCTAAGCATCGGAAAAATAAGGCAAAGAAGATAATTTCTTGGATACTTGGGTTCCTCGCTGGAGCAATTGCTGGAAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTCGTCATAGCAGCTATAAAAGGTGGAAGCAAGAATTCAGGTCCCTCAATCTTTGCTCCTAAGTTGATAAGACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCTGAATTACCAGAAAAAAGCGGGAAAATGTTTGCGATAAAGAAGATAACTCAACCCCCAAGGGACGCGGCCGAGTTAGCTGACGAGGATAGCAGGCTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAAAACTGTGGGTGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCTCATGTCCCTCGTCCTGATTGCCACTACCTTGTGTACGAATTGATGAAGAATGGCAGCTTGCAAGATATGTTGAATCAGGTTTCAGCAGGAGTGAAACAACTAGATTGGCTTACTCGCCATAACATTGCTCTTGGAGTTGCATCTGGGCTGGAGTATCTTCACATGAACCATACCCCCCGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTCGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACATTGAAGTTCACTGATAAATGCGACATATACGGCTTTGGGGTTCTGCTAGGTGTCTTGGTGATTGGGAAACTTCCATCTGATGAGTTTTTCCAGCACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCGGAAAATCCTAGGGGAGCCATTCATCCGAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTCTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTCAGATGCATGCTGTCACAGATCAAGCACGATGTACCTGAAACTCCCTCTCAAAATGTCTAA 1914 46.55 MASSSSKLLPFLAFLSLLLHVHARLNLDPSDLRAFSIIKNDLGIDGQLSPSPCHNAGVFCERRLSDNGTYVLRITRLIFNSKGLAGSLSPAIGRLTELKELTVSNNRLVDQVPAQIVDCRKLEILDLRNNQFSGKVPSGLSSLIRLRVIDLSSNKLSGSLDFLKHFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLETSAPIMKSVEFYSATEVPKRYKLAENSSTKGTHRAAARAPTSSAPAASPATPPTPKHRKNKAKKIISWILGFLAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIRRDDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKITQPPRDAAELADEDSRLMSKKMRQIKSEIKTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKQLDWLTRHNIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGFGVLLGVLVIGKLPSDEFFQHTDEMSLVKWMKNVMTSENPRGAIHPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETPSQNV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26428106 26430019 + Lsi06G016060.1 Lsi06g01606 666336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01606 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 7 627 - -
Lsi06g01606 637 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01606 637 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Lsi06g01606 637 Pfam Protein kinase domain 336 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01606 637 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515
Lsi06g01606 637 SMART serkin_6 333 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01606 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 627 - -
Lsi06g01606 637 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Lsi06g01606 637 MobiDBLite consensus disorder prediction 229 264 - -
Lsi06g01606 637 SUPERFAMILY Protein kinase-like (PK-like) 332 626 IPR011009 -
Lsi06g01606 637 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Lsi06g01606 637 SUPERFAMILY L domain-like 48 206 - -
Lsi06g01606 637 Gene3D Ribonuclease Inhibitor 18 161 IPR032675 -
Lsi06g01606 637 Gene3D Ribonuclease Inhibitor 162 218 IPR032675 -
Lsi06g01606 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01606 Lsi-Chr6:26428106 Lsi05g01053 Lsi-Chr5:18048728 9.11E-09 dispersed
Lsi09g01767 Lsi-Chr9:26417938 Lsi06g01606 Lsi-Chr6:26428106 2.53E-49 dispersed
Lsi06g01606 Lsi-Chr6:26428106 Lsi04g02307 Lsi-Chr4:30266100 1.64E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83754 PF00069 Pkinase 4.00E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01606 - - csv:101220500 1111.29