Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01609 ATGAATCGGTACGATTACTCTGGATACGGGCAGTCCACTGGAAAGCCAAGCGAGCACAATACTTATGCAGATATTGAAGCTGCATACAAGTGTCTTGAGGAGAAGTATGGTGCCAAGCAAGAGGAAATAATCCTTTATGGTCAATCTGTTGGAAGTGGCCCAACTTTGGACCTTGCTGCACGTTTGCCCCGTCTACGAGCAGTTGTCCTGCATAGTCCTATATTGTCAGGATTGAGAGTCATGTATCCAGTCAAACGCACGTACTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAGTGCCCTGTGCTGGGAACTTCCGACGACGTTGTGGATTTCTCTCACGGAAAACAGCTCTGGGAGCTGTGCCAAGAGAAATATGAACCCTTGTGGCTCAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCAGAATACATCAGGCATCTAAAGAAATTTGTGTCCACCGTTGAGAGATCGCCTTCACGAAGGAATGGTTCAAGGAAAAGCACAGACCGAATGGAGCAATCAAGAAGGAGCACGGATTGTTTCGAGGCCCCAAGAAGGAGCACAGACAGGCGAGAGAAGCCTATGAAAAGCGTCGATAGGCTAGACAAATCGAGACCGCAAGGATACAAGTTTGACAACATCGAGAAGCTAGAGAAACTTAAAATCTCTATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATTCTATGAGAAACCAAGAAGAAGCATCGACCAACAGTTTGAAAAAGCTCGAAAGAGCGTCGATTGGTTGGATAGAATTCGAGCCGGAGGGCGATCGATTATGATCATGTCCCCAAACGACATAGCAAACGAATCGATTAAGCACGCTCTCAGGGCGCTTCGGCAACGCCATCTGGTTGAAGAAGGCGCGCATGCTCCTGCTTTTCTCGCTCTCTCTCGCCCCATCATAACCCAGAGTTCGGAATGGAAAGAGAAAGCGGAGAAGCTGGAGTTGGAGCTTCAGCAGTGTTATAAGGCTCAATCACGATTGTCTGAGCAACTTGTGGTTGAAGTTGCTGAGGTTCGAACTTCTAAATCTTTGATTGGGGAGAAAGATGCTGTAATTGATAATTTGGAGCAGGAATTAAGTCGAGCCAGGGAAGAATGCTCCCAGCTGAAGGCAGACTTAGAGACTAAAATTAAAGCTTTGGAACTGGCTATATGTGAGAATCAAGAAATTAAAACACAGCTTGAAGCAATGACAGTTAAAGCTAAGAATGCGGAGGCTGAGAATAAGATGTTGGTTGACCGGTGGATGCTTCAAAAGATGCAGGACGCAGAACGCCTCAATGAGGCAAATGCACTCTATGAAGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAAGTTGATGGTGTGGTTCGCCAAAGCGAAGAGGGTGCTGAATTCTTTGTGGAATCCACTGTACCCTCAGTGTGCAAGCATAGGATCCGTGGCCATGAGGGGGGCTGTGGTACTATATTGTTTGAACATAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGTACAGTCAAATTGTGGGATACAAGTACAGGATCATTAAGTTCCACTCTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAATTACCCACGATAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACATCAGTTCTGGAAGGGTGCGCCATACGTTGACTGGTCACTCAGACAAAGTATGTGCCGTAGATGTAAGCAAAATTTCTAGCCGCTATGTTGTGAGTGCTGCATATGATCGCACCATTAAAATTTGGGATCTACAGAAGGGTTACTGCACCAAGACCTTCATTTTCGCCAGCAATTGCAATGCAGTTCGCTTCAGCATGGATGGACAGACCATTTGTTCTGGCCATGTGGATGGAAATCTTCGGTTGTGGGATATTCAAACAGGAAAATTGATCAGTGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACAATATTGACTAGTGGGAGAGATAACTTGCATAATTTATTTGATATCCGATCTTTGGAAGTCTGTGGGACATTACGAGCATCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGTCCAGATGACAACTATGTTGCTGCTGGTTCCGCCGATGGGTCTGTCCATGTCTGGTCAATATCAAAACATGATATCACAAATGAAAAGAGGAGTAAAAAAACATGTGATGATAGCATAGAGAAGCCTGGAACTTTTATTATAGAATTGTGGAAAGTGTTTGTTAGTGTTAGTTTTGCATACTTGGCGATTGAGGGAGGTGGGATCAATGCGAGACCAGAAGAGAGAGAGAAGGTTGGTGTAAGGGCAGAGTTTCGGGTCGAACACGACCCGAACAACCTCCACATGATTGGTAATTCCAGAGCAGACCAGTTTGTAAGTTGGATGTGGAGTGTGGCCCTGAGAGTAACCAACCTCGGTTTTGACCACGCCTACAAGTCGCTGGAAGGCAAGCTCTGCTCCCCAAAAGCAGCCAGCGCCGAACTCTGCAAACTCATAGGCTGGATTTTCAGGGACGTCGGTATCGGGGTCCAGGGCCGGGTTGCTGGAATCTGCAGCAGAAGCCATTCCCCTCCGTTTCTGATTGGAAGTATTTTCTTAAAAACTTGTATGCAACAAGCAACCATGAGTAGGAATGACATTATCATAGAGTTAAAAAGAATTAAGCAATTGCCCAAAACGCCAAGAAGACACATCAAGCAAATTGAAAATGACATATTAACTCCAATGAAGCGACAGAGACACAAACCATCAATGGCTCTTGATGGTGACGGGGGCAGCTTCTTCTCCACGGATTTCACCTCCGTCGGAAAGGAGGATGAAGATGCGGTGGGTGACGGAGCCGCCCATTGGCTCTCCTTGTTGGATGACACTGCTGCAGCAAGCAGATGGGTTATTTCCTTCTCCGACGAATTCAGACATAAGAGACTTAAAATTGAACCTGAATCAATCCCAACTGATGATGGAAGTGGAAACAGTAGCAACAATAGAAGTAGCCTTAGCCTCAGCCGAAGCAGCAGCTCTGATAGCTTGAGTACTGGCTTCCGAGCCCACATCTGGACTTATAATCAGCGTTATTTGGCGGCAGAGGCCGTGGAGGAAGCTGCCACAGCCATCATCAATGCAGAGGAGAGTGCAGCGGAAGAGGATGCTAGTGCTGATGGGATGAGGCTTTTACACCTTCTTGTTGCTTGTGCTGAGGCTGTGGCTTGTCGTGATAGATCTCATGCTTCAATTCTTCTATCTGAGCTTCGAGCCAATGCTTTGGTATTTGGCTCTTCCTTCCAACGAGTGGCTTCTTGTTTCGTCCAAGGCTTGGCCGACCGTCTCGCTTTAGTTCAGCCACTTGGCTATGTTGGCTTTGGTCTACCCATCATGAGTAGAGTGGATCATTCCTCTGATAGGAAGAGAAAGGATGAGGCTCTAAATCTTGCCTATGAGATTTACCCACATATCCAATTTGGGCATTTTGTGGCTAATTCATCAATATTGGAAGTCTTTGAGGGAGAGAATTCTGTCCATGTGTTGGACTTGGGAATGGCGTTTGGTTTGCCATACGGTCATCAATGGCGTAGCCTTATAGAGAGCCTCGCGGAATCTCCGAACCGGCGACTGCTCCGAGTCACTGGCATTGGCCTCTCTGTAAACAGATACAGAGTGATGGGGGAGAAATTGAAATCTCACGCAGAAGGGGTTGGAGTTCAAGTGGAGGTTTCAGCTGTAGAGGGAAATTTAGAAAATCTCCGACCCCAAGACATAAAACTTCACGATGGTGAAGCTTTGGTCATCACCAGCATTTTTCAGATGCATTGTGTGGTTAAAGAAAGCAGAGGAGCTCTAACCTCTGTACTTCGAATGATTTACGACCTTTCCCCCAAGGCTCTTATTTTGGTGGAGCAAGATTCAAATCACAATGGACCCTTTTTCCTAGGGAGATTCATGGAAGCTCTTCACTATTATTCTGCCATATTTGATTCATTAGATGCCATGTTGCCCAAATATGACACCAGAAGAGCGAAGATTGAGCAATTCTATTTTGCTGAGGAGATAAAAAACATAGTGAGCTGCGAGGGGATGGCGAGGGTCGAGAGACATGAGAGAGTGGACCAATGGCGGAGGAGGATGAGCAGGGCAGGATTTCAAGCTTCACCCATTAAAGTAGTGGCTCAGGCAAAGCAATGGATTGGGAAGTTTAAGGCTAATGAAGGTTATACAATTGTGGAAGAAAAAGGGTGTTTGGTTCTTGGTTGGAAGTCCAAGCCCATTGTCGCAGCCTCTTGCTGGAAATGCTAA 4401 45.92 MNRYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLGTSDDVVDFSHGKQLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSRRNGSRKSTDRMEQSRRSTDCFEAPRRSTDRREKPMKSVDRLDKSRPQGYKFDNIEKLEKLKISIDQVERSRRSVEFYEKPRRSIDQQFEKARKSVDWLDRIRAGGRSIMIMSPNDIANESIKHALRALRQRHLVEEGAHAPAFLALSRPIITQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEVRTSKSLIGEKDAVIDNLEQELSRAREECSQLKADLETKIKALELAICENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEFFVESTVPSVCKHRIRGHEGGCGTILFEHNSGKLISGGQDRTVKLWDTSTGSLSSTLHGCLGSVLDLAITHDNRSVIAASSSNNLYAWDISSGRVRHTLTGHSDKVCAVDVSKISSRYVVSAAYDRTIKIWDLQKGYCTKTFIFASNCNAVRFSMDGQTICSGHVDGNLRLWDIQTGKLISEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNYVAAGSADGSVHVWSISKHDITNEKRSKKTCDDSIEKPGTFIIELWKVFVSVSFAYLAIEGGGINARPEEREKVGVRAEFRVEHDPNNLHMIGNSRADQFVSWMWSVALRVTNLGFDHAYKSLEGKLCSPKAASAELCKLIGWIFRDVGIGVQGRVAGICSRSHSPPFLIGSIFLKTCMQQATMSRNDIIIELKRIKQLPKTPRRHIKQIENDILTPMKRQRHKPSMALDGDGGSFFSTDFTSVGKEDEDAVGDGAAHWLSLLDDTAAASRWVISFSDEFRHKRLKIEPESIPTDDGSGNSSNNRSSLSLSRSSSSDSLSTGFRAHIWTYNQRYLAAEAVEEAATAIINAEESAAEEDASADGMRLLHLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLADRLALVQPLGYVGFGLPIMSRVDHSSDRKRKDEALNLAYEIYPHIQFGHFVANSSILEVFEGENSVHVLDLGMAFGLPYGHQWRSLIESLAESPNRRLLRVTGIGLSVNRYRVMGEKLKSHAEGVGVQVEVSAVEGNLENLRPQDIKLHDGEALVITSIFQMHCVVKESRGALTSVLRMIYDLSPKALILVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFYFAEEIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIKVVAQAKQWIGKFKANEGYTIVEEKGCLVLGWKSKPIVAASCWKC 1466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26449440 26462434 + Lsi06G016090.1 Lsi06g01609 666339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01609 1466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1013 1465 IPR005202 -
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 632 664 IPR001680 GO:0005515
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 534 - -
Lsi06g01609 1466 ProSiteProfiles GRAS family profile. 1085 1465 IPR005202 -
Lsi06g01609 1466 Pfam Autophagy protein 16 (ATG16) 319 444 IPR013923 -
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
Lsi06g01609 1466 Coils Coil 320 347 - -
Lsi06g01609 1466 MobiDBLite consensus disorder prediction 1022 1047 - -
Lsi06g01609 1466 Pfam WD domain, G-beta repeat 493 529 IPR001680 GO:0005515
Lsi06g01609 1466 Pfam WD domain, G-beta repeat 722 743 IPR001680 GO:0005515
Lsi06g01609 1466 Pfam WD domain, G-beta repeat 577 614 IPR001680 GO:0005515
Lsi06g01609 1466 Pfam WD domain, G-beta repeat 620 655 IPR001680 GO:0005515
Lsi06g01609 1466 Gene3D alpha/beta hydrolase 2 158 IPR029058 -
Lsi06g01609 1466 ProSitePatterns Trp-Asp (WD) repeats signature. 601 615 IPR019775 -
Lsi06g01609 1466 MobiDBLite consensus disorder prediction 161 211 - -
Lsi06g01609 1466 ProSitePatterns Trp-Asp (WD) repeats signature. 516 530 IPR019775 -
Lsi06g01609 1466 SUPERFAMILY alpha/beta-Hydrolases 3 159 IPR029058 -
Lsi06g01609 1466 Coils Coil 362 400 - -
Lsi06g01609 1466 Coils Coil 22 42 - -
Lsi06g01609 1466 MobiDBLite consensus disorder prediction 1016 1047 - -
Lsi06g01609 1466 SUPERFAMILY WD40 repeat-like 489 747 IPR036322 GO:0005515
Lsi06g01609 1466 PRINTS G protein beta WD-40 repeat signature 601 615 IPR020472 -
Lsi06g01609 1466 PRINTS G protein beta WD-40 repeat signature 642 656 IPR020472 -
Lsi06g01609 1466 PRINTS G protein beta WD-40 repeat signature 516 530 IPR020472 -
Lsi06g01609 1466 Gene3D - 628 762 IPR015943 GO:0005515
Lsi06g01609 1466 PANTHER DELLA PROTEIN RGL1-LIKE 1013 1465 - -
Lsi06g01609 1466 SMART WD40_4 617 655 IPR001680 GO:0005515
Lsi06g01609 1466 SMART WD40_4 658 697 IPR001680 GO:0005515
Lsi06g01609 1466 SMART WD40_4 532 571 IPR001680 GO:0005515
Lsi06g01609 1466 SMART WD40_4 490 529 IPR001680 GO:0005515
Lsi06g01609 1466 SMART WD40_4 700 743 IPR001680 GO:0005515
Lsi06g01609 1466 SMART WD40_4 574 614 IPR001680 GO:0005515
Lsi06g01609 1466 CDD WD40 493 743 - -
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 580 IPR001680 GO:0005515
Lsi06g01609 1466 Pfam GRAS domain family 1094 1465 IPR005202 -
Lsi06g01609 1466 Gene3D - 354 627 IPR015943 GO:0005515
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 618 - -
Lsi06g01609 1466 Coils Coil 404 431 - -
Lsi06g01609 1466 Coils Coil 440 460 - -
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 538 IPR001680 GO:0005515
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 700 IPR001680 GO:0005515
Lsi06g01609 1466 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 752 IPR001680 GO:0005515
Lsi06g01609 1466 ProSitePatterns Trp-Asp (WD) repeats signature. 642 656 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01609 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219547 907.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00482 Lsi-Chr5:6135301 Lsi06g01609 Lsi-Chr6:26449440 1.71E-132 dispersed
Lsi06g01609 Lsi-Chr6:26449440 Lsi08g00920 Lsi-Chr8:17607158 1.53E-76 dispersed
Lsi07g00686 Lsi-Chr7:7397319 Lsi06g01609 Lsi-Chr6:26449440 1.26E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25557 PF03514 GRAS 9.00E-100 CL0063 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01609 Lsi_Chr06 FPKM 8.479582 8.42431 7.645943 5.486353 8.003986 9.873834 7.397228 10.985485 11.454011 11.782573