Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01613 ATGGCGTCCACTACACTCTCCGTCTCCTCGCCTTCGATTTCTGGTTCTACAACGCCTTGTCTTCCTAATACCGCCGCCACCGTTGCTTATTTCAAACCCCGTACTAGAACTTTCTCTACTTTACTTTTGGGTAAAAGCCTAAGTTTGTATGGAACATCGAGAATCCAGCCAATGGGGGCTAAGAATGCTTCTAATGGGATCACTTGCCAGGCTTCTTCTTCTGTTCTTCCGTCTGCTCTTCTTTTCGATTGCGACGGGGTTCTTGTCGATACTGAAAAGGATGGCCATCGGATTTCCTTCAATGAGACATTTGATGAGAAAGAATTGGGCGTTACTTGGGATGTAGATTTGTATGGTGAGTTACTCAAAATTGGAGGAGGAAAAGAAAGGATGACAGCGTACTTCAATAAAGTTGGATGGCCAGAAAAGGCTCCAAAGAATGAAGATGAAAGAAAGACATTCATTGCTGGACTTCACAAGCGAAAGACAGATTTGTTCATGGCCCTTATTGAGAAGCAATTACTACCCCTTCGACCTGGTGTTGCAAAGCTGATTGATCAGGCATTAGCAAATGGAGTGAAAGTTGCTGTTTGTAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTTTTACTTGGACCTCAACGAGCTGAGCAGATCAAGATATTTGCAGGAGATGTAGTGCCTCGAAAGAAGCCTGACCCAGCTATCTATATTTTAGCAGCCAACACCCTGGGTGTTGATCCTTCAAGTTGTGTCGTGGTGGAGGACAGTGCCATTGGCCTTGCTGCTGCTAAATCTGCTGGAATGAAGTGCATAGTAACAAAGAGCGGGTACACGGCTAAGGAAGATTTTCTAAATGCAGATGCAGTCTTTGACTGCATTGGAGATCCCCCAGAAGAGCATTTTGACTTGGCATTCTGTGGAAGTCTTCTTGAGAAGCAGTATAATCTGATCCTAAGCTTCCACATTCAGAGGAAAATGGCGATTAAAAATATTGAGGTGACCTCCGAGGAAATAATTTTGCCGTCTTCTCCAACTCCTCTGCCGCTCAGAAACCTCAAGCTTTCACTGCTCGACCAGATTTCGCCGTCCAATTATACTCCGATCATCTTCGTCTACGCCGCCGTTGAGAATCCCGGAGCCGATCGGTTTTCTGGAAGTCGCCAGTTGAAGAAGTCATTATCGGAGATTTTGACTCTCTTCTATCCTTTCGCCGGAACTCTGTCAATTGAGGGATATTCCGTCGACTGTAACGATAGAGGCGTTGAATATTCTGAAGCGCGAGTCGGTTGCGAGCTGTCGGAAGTGGTGGAAAATCCTGATTTCAAAGTCCTTCACCGTTTGCTGCCGTTTGAGCCTTACGCTAATTTGGCCGAACCAGAGATCGGAAGAGATGTAATCCTTGCCATCCGATTGAATTTGTTCGACTGCGGCGGCTTGGCGATTGCTCTGTGTATCGCTCATAAACTCGTCGACGGATTTTCCGCTACCGTATTTGTCAGAAAGTGGGCGGCCATCAATCGAGGAGATAGCGATCAGGTTTCGAAGCCCTTATTTGATGGTGCAAAGTACTTTCCCCCGAAGGAAATTCCAGGATTGAAGAGAAACAAAGTTGTTCTAAACGACAAGATTGTAACAAAAAGATTGGTGTTCAGTAAAGCAAACATAGCCGCACTCCGGCAAGAAGCCACTGTCGGATCTCTAGAGAAGCCGCCGACGAGAGTGGAAGCCGTTTCGGCATTCTTATGGAAGCGATTCATGGAGATAAACCCACATTCAGAACAAGAAAACGCAAAAATCTTTGCCGCAGTCCACGCGGTGAACTTGCGCGGCAAGATGGATCCGCCATTAACGCCAAACTCCTGCGGCAACCTATGGTGGTTCGCCATCGCCGTCGCAGAGGCTGAAATCGAGAAGCGGCATCAATACTTAGTGAATCAGATAAGGAACGCAATAGAAGAGATTGACAGTGACTTCGTAGGGAACTTACAGCAGGCTGGCGTGCCGGCGCATATGTGGAGCAAGATGGGGAAACACGGCGGGACGGGCGGTGGAGAGGTGGAGTTCTGTAACTTCACGAGTTGGTGTCGGTTTCCGGTGTACGAAGCGGACTTCGGGTGGGGGAAACCGTCGTGGGTTTGCAGTCCGAGCCGGCCGTACAAGAATGTAGTTGTTCTAATGACAACCAGAGACGGCGATGGAATTGAGGCTTGGGTAACGCTCAAGGAAGAAGATATGGCTTCCTTCCAACCAGATTCTGAATTAGATTCCTTTCACGTTGAAGTATAA 2298 47.39 MASTTLSVSSPSISGSTTPCLPNTAATVAYFKPRTRTFSTLLLGKSLSLYGTSRIQPMGAKNASNGITCQASSSVLPSALLFDCDGVLVDTEKDGHRISFNETFDEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPEKAPKNEDERKTFIAGLHKRKTDLFMALIEKQLLPLRPGVAKLIDQALANGVKVAVCSTSNEKAVSAIVSFLLGPQRAEQIKIFAGDVVPRKKPDPAIYILAANTLGVDPSSCVVVEDSAIGLAAAKSAGMKCIVTKSGYTAKEDFLNADAVFDCIGDPPEEHFDLAFCGSLLEKQYNLILSFHIQRKMAIKNIEVTSEEIILPSSPTPLPLRNLKLSLLDQISPSNYTPIIFVYAAVENPGADRFSGSRQLKKSLSEILTLFYPFAGTLSIEGYSVDCNDRGVEYSEARVGCELSEVVENPDFKVLHRLLPFEPYANLAEPEIGRDVILAIRLNLFDCGGLAIALCIAHKLVDGFSATVFVRKWAAINRGDSDQVSKPLFDGAKYFPPKEIPGLKRNKVVLNDKIVTKRLVFSKANIAALRQEATVGSLEKPPTRVEAVSAFLWKRFMEINPHSEQENAKIFAAVHAVNLRGKMDPPLTPNSCGNLWWFAIAVAEAEIEKRHQYLVNQIRNAIEEIDSDFVGNLQQAGVPAHMWSKMGKHGGTGGGEVEFCNFTSWCRFPVYEADFGWGKPSWVCSPSRPYKNVVVLMTTRDGDGIEAWVTLKEEDMASFQPDSELDSFHVEV 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26465791 26472847 - Lsi06G016130.1 Lsi06g01613 666343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01613 765 Gene3D - 332 534 IPR023213 -
Lsi06g01613 765 Gene3D - 544 759 IPR023213 -
Lsi06g01613 765 Pfam Haloacid dehalogenase-like hydrolase 80 276 IPR041492 -
Lsi06g01613 765 Gene3D Putative phosphatase; domain 2 91 175 IPR023198 -
Lsi06g01613 765 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 163 276 IPR006439 -
Lsi06g01613 765 Pfam Transferase family 334 758 - -
Lsi06g01613 765 Gene3D - 79 296 IPR023214 -
Lsi06g01613 765 SFLD phosphoglycolate phosphatase 76 304 - -
Lsi06g01613 765 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 76 304 - -
Lsi06g01613 765 PANTHER VINORINE SYNTHASE-LIKE 333 763 - -
Lsi06g01613 765 CDD HAD_CbbY-like 79 279 - -
Lsi06g01613 765 PANTHER F21J9.9 333 763 - -
Lsi06g01613 765 SUPERFAMILY HAD-like 78 299 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01613 - - - csv:101219070 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00779 Lsi-Chr1:6115422 Lsi06g01613 Lsi-Chr6:26465791 2.66E-28 dispersed
Lsi02g00477 Lsi-Chr2:3970445 Lsi06g01613 Lsi-Chr6:26465791 9.91E-139 dispersed
Lsi06g01613 Lsi-Chr6:26465791 Lsi08g01619 Lsi-Chr8:24124368 1.01E-82 dispersed
Lsi06g01611 Lsi-Chr6:26462810 Lsi06g01613 Lsi-Chr6:26465791 6.96E-136 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01613 Lsi_Chr06 FPKM 10.089561 8.646384 8.102626 8.965079 11.342404 10.593777 10.097225 7.506124 6.655488 7.713347