Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01616 ATGGAGGAAGCATGCAACATGGAAACTGACATTGATGAAATATCTCATCACATATCTTCATCAGTGTCCATTAACAATGGTGGATTGGAAATGAGTTCTGGCAAAAAACAACAAGAATCTGGTTCGAACAAAAATGCTGTTTTGCCAGAGGTGATTAAGCCCTGTGGACGTATTAACTCCTGCGTGGTTGTTGGAAGAGATACACTGTACATATATGGGGGTATGATGGAGATTAAAGATCGGGAAATCACCCTTGATGATTTGTATGCTCTCAATCTCAGTAAACTTGATGAATGGAAGTGCATTATTCCGGCCACGGAATCTGAATGGGTAGAAGCCTCAGAGGATGAAGATGAGGAAGATGATGAAGATGACAGTGAGAATGATGACAATTCTGAAGGAAGCAATGAAAGTGATGAGGATGGTAGTGATGAGGAGGATTTTGAGGCTGGAAATGATGGATCGCGAAAAGTAGGAGATGCTGTAGCTTTAATTAAGGGTGAGGGCAGGAATTTTCGTAGGAAAGAGAAGCGGGCAAGGATCGAACAAATCAGAGCTAACCTTGGGCTTTCAGATTCACAAAGAACTCCTATGCCTGGAGAATCTCTAAGGGAATTCTATAAACGTACAAATCTATACTGGCAAATGGCGGCACATGAGCATACACAACATACTGGAAAGGAACTTCGCAAGGACGGTTTTGATCTTGCTGAATCTCGTTATAGGGAGCTGAAACCCATTCTTGATGAGCGGCTCGTTGCCGGGTTTCGCAACTTGCAAATTACCAGAGCAATGAAGAAGAAAGCAACAGCAGGCACCATAATTCTTCTCTCACTTTTACTTTCTCTTCAAGAAGTTGTTCATTTTGCTTTCGCTCTACCTCCTTCGCACAGCAATCAGATGTTTACAAGAAGAATCACTCACTTAACTACGGCAAAGGAAATCCCTTTTCCCAGATTTTCCATCAGTGCACTGTCGGAAAATAAAAAAAAGAATAATCGTATAAAAGAACCTTCCAGCCACGACCAAGTTCCTCTGTTCCTCAGGAACATGACTCATCAGTCATCACGCGAGGACGTGGAGCAATCTGCAACTTCAAGGTACCTCTTTTCTCCCATCACAGTGGACTCTCTCTCCCTCTGTTATAGCTTAGTGAAAACCCAAAGTTATCTGACATTGGCAATTGATGTGATTCCAAAGAAGATGTGTTATTCCCCAGTATTGTATTTCAACTTTCGTTGTAATGTATTCTACACCCTATTTATTTACAACCTTACTTCTCTCTCTCTAACCAAGACATCTTATTTAGGCGATATCTTTTGTGGGTCTCTAATTTTAGGCAAGCAAGAAGCTCTTGCCCTACCTCTCGAGCAAGACAAAGAGCATCTTGATGAAGTTCATTGTTCCAGAGAAAGAAGTAGGACAGCCTGGAATATTATTGAGGAGCATTTGCTGCCGTTTATGGAAAAAGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAAACAACGATCTCTTCAGAGATCAGGAACAGCACAAGATTCATCTTGATATAAATCATTGGCAGTGTGGATACTGTCGTAAAAGCTTCCGTGCTGAAAAGTTTCTTGATAAGCATTTTGACAACAGACATAACAATCTTCTGAATGTTAGCCACGGGAAGTGCTTGGCTGATTTATGTGGGGCATTACATTGTGACCTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAATCCTGCAGCTGCTGCTAGGAACAAGCATTTATGTGAGGTTGCTTAG 1788 41.33 MEEACNMETDIDEISHHISSSVSINNGGLEMSSGKKQQESGSNKNAVLPEVIKPCGRINSCVVVGRDTLYIYGGMMEIKDREITLDDLYALNLSKLDEWKCIIPATESEWVEASEDEDEEDDEDDSENDDNSEGSNESDEDGSDEEDFEAGNDGSRKVGDAVALIKGEGRNFRRKEKRARIEQIRANLGLSDSQRTPMPGESLREFYKRTNLYWQMAAHEHTQHTGKELRKDGFDLAESRYRELKPILDERLVAGFRNLQITRAMKKKATAGTIILLSLLLSLQEVVHFAFALPPSHSNQMFTRRITHLTTAKEIPFPRFSISALSENKKKNNRIKEPSSHDQVPLFLRNMTHQSSREDVEQSATSRYLFSPITVDSLSLCYSLVKTQSYLTLAIDVIPKKMCYSPVLYFNFRCNVFYTLFIYNLTSLSLTKTSYLGDIFCGSLILGKQEALALPLEQDKEHLDEVHCSRERSRTAWNIIEEHLLPFMEKENYQVSTKCRLHPNNDLFRDQEQHKIHLDINHWQCGYCRKSFRAEKFLDKHFDNRHNNLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCNPAAAARNKHLCEVA 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26481657 26491710 - Lsi06G016160.1 Lsi06g01616 666346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01616 595 Pfam Domain of unknown function (DUF4110) 189 250 IPR025183 -
Lsi06g01616 595 MobiDBLite consensus disorder prediction 110 148 - -
Lsi06g01616 595 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 448 593 - -
Lsi06g01616 595 ProSitePatterns Zinc finger C2H2 type domain signature. 525 546 IPR013087 -
Lsi06g01616 595 Pfam Galactose oxidase, central domain 60 102 - -
Lsi06g01616 595 MobiDBLite consensus disorder prediction 107 155 - -
Lsi06g01616 595 PANTHER ZINC FINGER PROTEIN-RELATED 448 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00484 Lsi-Chr5:6156927 Lsi06g01616 Lsi-Chr6:26481657 2.09E-66 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25559 PF13422 DUF4110 8.40E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01616 - - csv:101218127 386.341