Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01620 ATGTCTCGCCGGAGCATCATGGCGAGAGTTAACGATAATTGGGAGAGGCTAGTGCGTGCGACTTTGAAGAGAGAGCAGCTTAGAAATGCAGGGCAAGGCCATGGGAGGACTCCCAGTGGGATTGTTGGAGCTGTACCGCCCTCTCTTGGAAAAACCACAAACATTGACGCTATTTTGCAGGCTGCCGATGAAATCCAAGCGGAGGACTCAACTGCGTACAGAATGGCACAAAACTTGGATCCCAACAGCGATGGTAGAGGTGTTCTTCAGTTCAAGACTGGATTGATGTCTGTTATTAAGCAAAAACTTGTAAAGAAGGATGGGGCATCTATAGATCGTCATCGTGATATTGAACATCTGTGGGAGTTCTACAAGCAATATAAGAGACGACATAGAATAGATGATATACAGAGAGAAGAACAGAAATGGCGGGAGTCAGGAGTAATCAGTGCTAACTTGGGAGAGTTGGAGCTTAGATATTCTGAAGCGAAGAAAGTAATTGCTAACCTTAGGGCTTTAGTTGAGGTGATGGAGGCCCTCAGCGGAGATGCAGATCCTCAAGGAGTCGGAAGATTGATTATGGAGGAGCTACGAAGAGTTAGAAGTTCTGATACTACATTATCTGGGGAATTCGTACCCTACAATATTGTTCCCTTGGACGCACAATCACTGACAAACGCCATTGGCATTTTCCCTGAAATATCTGGACAAAGGGGTGCAGATATGTTTGACCTTCTTGAATATGTATTTGGATTCCAGGGGGACAACATAAGAAATCAACGAGAGCATGTGGTTCTCATGGTAGCAAATGCTCAATCACGTCTTGGCATACCTGATAATGCTGATCCGAAAATAGATGAGAAAGCAGTCAACGTGGTTTTTTTGAAGGTGCTTGATAACTACATCAAATGGTGTAAATACTTGCGTATTCGCCTTGCATGGAATAGCTTAGAGGCAATTAATAGGGACAGGAAGCTCTTCCTTGTTTCTCTGTACTTGCTTATATGGGGTGAAGCTGCAAATGTCCGCTTCCTTCCCGAATGCATTTGCTATTTGTTCCACCATATGGCAAAAGAATTGGATGCTATACTTGATCATGGAGAAGCAATTCCTTCTAAAAACTGCATGCTGGAAGATGGTTCCATGTCTTTCCTCCAACGAATCATTTCTCCTATCTACGAGACACTTGTAGCTTCATCATGGGTTGACCAAGTGGTAAATAGGGGGCATGACCTTGATAAAGACTTAAGAGGTCATGGGTCACCTACTTGCTTTGAATTGGGCTGGCCAATGAGGAAAGAATCAAATTTTTTACAGAAGCCTAAAGGCTCGAAACGGACTGGCAAGACATCTTTTGTTGAGCATCGCACATTTTTTCATTTGTATCGCAGTTTCCACCGTCTCTGGATCTTTTTGGCAATTGTATTCCAGGCGCTGACAATTTTTGCCTTCCACAATGAGCGTATTAATTTGGACACTTTCAAAGCTATTCTTAGCATTGGCCCAACATTTGCAATCATGAACTTTATTGAGAGCTCCCTAGATGTATTGCTTACTTTTGGGGCATACACCACTGCAAGAGGAATGGCTATATCAAGGATTGTTATTAGGAAGGTTCTTGAAGAAAGAAAGACTCGAAGCTCAGATAATTCATTCTATTTTCGAATTTATATTATAGTATTGGGTGTTTATGCTGCTTTACGCCTTGTGGTTGCAATGTTGCTGAAGTTACCTGCATGCCATACTCTTTCTGAGATGTCAGATCAGTCTTTTTTTCAATTTTTCAAATGGATCTATCAGGTAATTTTTTCTCAGACGCTAGATAATAACAATGTGTCGACTGTAGTTAGCTTATGGGCTCCTGTTGTGGCTCTCTATCTCTTGGACATTTACATATGGTACACACTCTTGTCAGCCATCGTGGGTGGTGTAAAGGGTGCTCGGGGTCGGTTGGGAGAGATACGATCACTTGAAATGATGCACAAACGTTTTGAGAGCTTTCCAGAAGCATTTGTGAAGAACCTTGTCTCTACACAGACAAAAAGTTTGCCACCCAGCGGACAAGCACCTCAGGACTCTCCGGATATGAGCAAGGCATATGCAGCAATATTTTCTCCATTTTGGAATGAGATCATTAAAAGTTTACGTGAGGAAGACTTCATTAGCAATAGGGAGATGGACTTGCTTTCTATTCCCAGCAACACAGGGACCCTCAGATTGGTCCAATGGCCCTTGTTTCTTTTAAGTAGTAAGATATTCTTGGCTGTTGATCTGGCTTTGGATTGCAAAGATACGCAGACAGATCTATGGAACAGAATATGTCGGGATGAGTATATGGCATATGCAGTTCAGGAATGCTACTACAGTGTTGAAAAAATCTTATATGCCCTTGTCGATGGTGAAGGGAGACTTTGGGTTGAAAGGATATTTCGGGAGATTACCAATAGTATTTCAGAGGGTTCGCTGGTTATAACATTGAACCTTAAGAAGATTCCAATTGTGTTACAAAAGTTTACAGCGCTTACAGGGCTTTTGACTCGGAATGAAACTCCTGAACTTGCTAGAGGTGCTGCAAAAGCTGTATTTGAGCTTTATGAGGTTGTTACTCATGACCTGCTTTCATCAGATTTGAGGGAGCAGCTTGATACATGGAATATCTTGTTGAGAGCAAGAAACGAAGGTCGCCTTTTTTCTCGGATTGAATGGCCCAAAGATTCAGAAATTAAAGAGCTTGTGAAGCGTCTGCATTTACTTCTTACAGTGAAGGACTCTGCAGCTAACATCCCAAAAAATCTCGAAGCAAGAAGAAGACTACAGTTTTTTACAAATTCATTATTTATGGACATGCCTTCGGCAAAACCTGTCAGTGAAATGGTGCCGTTCAGCGTCTTTACTCCATACTACAGTGAAACCGTGCTTTATAGTTCCTCTGAAATACGAATGGAAAACGAGGATGGCATATCCATTCTTTTCTATCTTCAGAAGATTTTTCCAGATGAATGGGAGAACTTTTTGGAACGGATTGGTCGAGGTCATGCCACTGGGGAAGCTGAGATCCAAAAAAGTCCGAGTGATGCGTTGGAGCTTCGATTCTGGGTTTCTTACAGAGGGCAGACTCTAGCTCGGACTGTTCGTGGTATGATGTACTACAGAAGAGCTTTAATGCTTCAGAGCTATCTGGAGAAGAGATCATATGGGGATGATTATTCTCAAACGAACTTTCCGACAAGTCAGGGCTTTGAGTTATCTCGAGAATCAAGGGCACAAGCAGACTTGAAGTTTACCTATGTCGTTTCCTGCCAAATATATGGGCAACAAAAGCAGAGAAAAGCTCCAGAGGCTACTGATATTGCTCTTTTGCTGCAGAGGAATGAGGGACTTCGTGTTGCGTTCATTCATGTTGAAGATAGTACTACATCTGATGGTAAGGTTGTGAAGGAATTTTATTCGAAGCTTGTGAAAGCTGATATACATGGAAAGGATCAGGAGGTATATTCGATCAAACTTCCTGGAGAACCAAAGCTAGGAGAAGGAAAACCTGAAAACCAAAACCATGCTATAGTTTTCACTCGTGGAGATGCTGTTCAAACTATTGACATGAACCAGGACAACTATCTTGAAGAGGCAATGAAAGTGAGAAATCTTCTGGAGGAATTTCATGGAAAGCATGGGCTTCGCTCTCCTACCATCTTAGGCGTGAGAGAGCATGTATTCACTGGAAGTGTCTCTTCGTTAGCATGGTTCATGTCCAATCAGGAAACGAGCTTTGTAACCTTGGGACAACGTGTTTTGGCAAGTCCACTCAAAGTCCGAATGCATTATGGGCATCCTGATGTGTTTGACCGTATATTTCATATAACTCGAGGTGGCATTAGCAAGGCATCACGTGTGATCAACATTAGTGAGGATATATTTGCAGGTTTCAACTCCACTTTGAGGCAGGGTAACATTACACACCACGAGTACATTCAGGTTGGAAAAGGAAGGGATGTTGGGTTAAACCAAATAGCCCTGTTTGAAGGGAAAGTAGCTGGTGGGAATGGAGAGCAAGTTCTCAGCAGGGATGTTTACAGGCTTGGGCAACTGTTTGATTTCTTCAGAATGCTTTCGTTTTATTTCACAACTGTTGGTTACTATGCATGTACAATGATGACAGTTCTTGTGGTTTACATTTTCTTGTATGGACGGGTTTACTTGGCCTTCGCTGGACTTGACGAAGCAATCTCAAGAAGAGCAAAAATGTTGGGAAACACAGCATTGGATACTGCACTGAATGCTCAGTTTTTGTTTCAGATTGGAGTTTTTACAGCAGTCCCTATGATAATGGGTTTTATACTTGAACTTGGACTGCTGAAGGCTGTTTTTAGCTTCATAACTATGCAGCTTCAGTTATGTTCTGTCTTCTTCACATTCTCATTGGGGACAAGAACTCATTATTTTGGAAGAACTATTCTCCATGGTGGTGCCAAGGCAAGTCTTTATCGAGCAACAGGCAGAGGTTTTGTGGTCCAGCACATCAAATTTGCTGAAAATTATCGGCTCTACTCAAGAAGTCATTTCATCAAGGCTTGGTTCCTCGTCATTTCGTGGCTCTTTGCTCCTTATATCTTCAATCCATCTGGTTTTGAGTGGCAAAAGACTGTGGAGGATTTTGACGATTGGACGAGTTGGCTATTCTACAAAGGTGGAGTAGGGGTTAAGGGAGAGAACAGCTGGGAATCGTGGTGGGATGAGGAACAGGCACATATTCAAACATTCCGAGGTCGAATATTGGAGACAATTTTGACTGTGAGGTTCTTCATATTTCAATTTGGAATTGTGTACAAGCTCCATCTCACAGGAAAGGACACATCACTTGCGATCTTCACCTTTAGTCCTAAAAAATCGACGAACTTCCAGCTATTGATGAGATTTATTCAGGGTGTCACAGCCATTGTTCTCGTTACAGCTCTTGGTCTAGTTGTTGGCTTTACTAACTTGTCAATAACCGATTTATTTGCAAGTGTATTGGCATTTATTCCTACTGGATGGGCCATATTATGTTTCGCAGTTACTTGGAAGAAAGTGGTGAGAAGTCTAGGCTTGTGGGACTCAGTACGTGAATTTGCCAGGATGTATGATGCTGGGATGGGATTAATAATATTTGTGCCCATCGCATTCTTATCCTGGTTTCCATTCATTTCCACGTTCCAGTCTCGTCTGCTCTTCAACCAAGCTTTCAGCCGTGGGCTCGAGATCTCCCTCATCCTTGCTGGAAACAAAGCTAACGTCGAGACGTACTAA 5283 42.44 MSRRSIMARVNDNWERLVRATLKREQLRNAGQGHGRTPSGIVGAVPPSLGKTTNIDAILQAADEIQAEDSTAYRMAQNLDPNSDGRGVLQFKTGLMSVIKQKLVKKDGASIDRHRDIEHLWEFYKQYKRRHRIDDIQREEQKWRESGVISANLGELELRYSEAKKVIANLRALVEVMEALSGDADPQGVGRLIMEELRRVRSSDTTLSGEFVPYNIVPLDAQSLTNAIGIFPEISGQRGADMFDLLEYVFGFQGDNIRNQREHVVLMVANAQSRLGIPDNADPKIDEKAVNVVFLKVLDNYIKWCKYLRIRLAWNSLEAINRDRKLFLVSLYLLIWGEAANVRFLPECICYLFHHMAKELDAILDHGEAIPSKNCMLEDGSMSFLQRIISPIYETLVASSWVDQVVNRGHDLDKDLRGHGSPTCFELGWPMRKESNFLQKPKGSKRTGKTSFVEHRTFFHLYRSFHRLWIFLAIVFQALTIFAFHNERINLDTFKAILSIGPTFAIMNFIESSLDVLLTFGAYTTARGMAISRIVIRKVLEERKTRSSDNSFYFRIYIIVLGVYAALRLVVAMLLKLPACHTLSEMSDQSFFQFFKWIYQVIFSQTLDNNNVSTVVSLWAPVVALYLLDIYIWYTLLSAIVGGVKGARGRLGEIRSLEMMHKRFESFPEAFVKNLVSTQTKSLPPSGQAPQDSPDMSKAYAAIFSPFWNEIIKSLREEDFISNREMDLLSIPSNTGTLRLVQWPLFLLSSKIFLAVDLALDCKDTQTDLWNRICRDEYMAYAVQECYYSVEKILYALVDGEGRLWVERIFREITNSISEGSLVITLNLKKIPIVLQKFTALTGLLTRNETPELARGAAKAVFELYEVVTHDLLSSDLREQLDTWNILLRARNEGRLFSRIEWPKDSEIKELVKRLHLLLTVKDSAANIPKNLEARRRLQFFTNSLFMDMPSAKPVSEMVPFSVFTPYYSETVLYSSSEIRMENEDGISILFYLQKIFPDEWENFLERIGRGHATGEAEIQKSPSDALELRFWVSYRGQTLARTVRGMMYYRRALMLQSYLEKRSYGDDYSQTNFPTSQGFELSRESRAQADLKFTYVVSCQIYGQQKQRKAPEATDIALLLQRNEGLRVAFIHVEDSTTSDGKVVKEFYSKLVKADIHGKDQEVYSIKLPGEPKLGEGKPENQNHAIVFTRGDAVQTIDMNQDNYLEEAMKVRNLLEEFHGKHGLRSPTILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLASPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIFAGFNSTLRQGNITHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLFDFFRMLSFYFTTVGYYACTMMTVLVVYIFLYGRVYLAFAGLDEAISRRAKMLGNTALDTALNAQFLFQIGVFTAVPMIMGFILELGLLKAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKASLYRATGRGFVVQHIKFAENYRLYSRSHFIKAWFLVISWLFAPYIFNPSGFEWQKTVEDFDDWTSWLFYKGGVGVKGENSWESWWDEEQAHIQTFRGRILETILTVRFFIFQFGIVYKLHLTGKDTSLAIFTFSPKKSTNFQLLMRFIQGVTAIVLVTALGLVVGFTNLSITDLFASVLAFIPTGWAILCFAVTWKKVVRSLGLWDSVREFARMYDAGMGLIIFVPIAFLSWFPFISTFQSRLLFNQAFSRGLEISLILAGNKANVETY 1760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26512684 26554114 + Lsi06G016200.1 Lsi06g01620 666350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01620 1760 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 325 398 IPR026899 -
Lsi06g01620 1760 PANTHER BNAC03G35120D PROTEIN 606 1522 - -
Lsi06g01620 1760 PANTHER BNAC03G35120D PROTEIN 1522 1757 - -
Lsi06g01620 1760 PANTHER BNAC03G35120D PROTEIN 7 589 - -
Lsi06g01620 1760 Pfam 1,3-beta-glucan synthase component 928 1522 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Lsi06g01620 1760 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 606 1522 - -
Lsi06g01620 1760 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 7 589 - -
Lsi06g01620 1760 Coils Coil 153 173 - -
Lsi06g01620 1760 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1522 1757 - -
Lsi06g01620 1760 SMART FKS1_dom1_2 323 432 IPR026899 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00459 Lsi-Chr6:5103937 Lsi06g01620 Lsi-Chr6:26512684 0 dispersed
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g01620 Lsi-Chr6:26512684 7.42E-46 dispersed
Lsi06g00461 Lsi-Chr6:5162790 Lsi06g01620 Lsi-Chr6:26512684 5.07E-73 dispersed
Lsi06g01620 Lsi-Chr6:26512684 Lsi11g01625 Lsi-Chr11:24589546 1.17E-41 dispersed
Lsi06g01620 Lsi-Chr6:26512684 Lsi06g00462 Lsi-Chr6:5209926 1.27E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01620 K11000 - csv:101217890 3211.78