Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01622 ATGCCAGTTGGGATTGTGAAGGCAAGACGCAGGGTAGGAGTTGTAGGTATGCAAAAGGCAAAGGAAGTTTCCCTAATTTCTACGAAAGAATTGTGTTTGCCATCTGAAGAACCAGAAAACGAGAAGAGGTTTGATCGTTCAGTGGACTCGATCAGTCAGCTGCCGCAAGATATTCTAGTTTTCATCCTTTCTCTTCTACCACTGAAAGAAGGAGCGAGGACCAGTACTTTGTCACATAGGTGGATATGCTTGTGGTCTTATATCCCTTGTCTGAATTTTGATGCTCAGAAGAAGTTATTTGATCTACAACTTACAGAAAAGAACTTGGAGAGTGAGGGACGACACTACGTCAAATGTGTGAATCAAGTCATTGACTCGTACAAGGGTTCAAATTTAGAAACATTAAGAATTCGATTTAGTTTGGATTCAAGGTTTCAATGTGATGTCCATAAATGGGTCCAATTTGCAATCCAGTGGAACCTCAAGATGTTTGAGTTGAACTTATTGGATAGTTATGATTCTGGAAACTATAGTCCTTGTTCTTTTCCATGGTTATCTGGTGGACCAAAGGAGCATTTCCCAAGAGTTATGTTCTCTAATTCTAGTTCTCTTACAACCCTAAAGTTGATAGCTGTCAATGTGGTTGGAGAAGCTCTGGAGTGCTTTTTGACCAACTGCCCTCTTCTCGAAGAAAACAAAGGATTTCGAAAATGGCCTATTCTAGCAAATCTCAAGGAACTGGAGTTAATAGTGATAGCTGAAGGTCATTCTTCCCTTATTGGCTTCACATCCCTGATAAAAGCATCTCCTTGCTTGCTGAAGTTCACACTGAAGTTAGACTATCTCGATATGTTTGAACAGCGAGCACTACGCAAGGTGAGAAAATTCCCTCATCAACACATCAAAGTGGTAGAATTGGCTGGATTTGTTGGAAAACCAATTGATTTGGAGCTTGTCCAGTATTTCTATAAGAATGCCGTTGCACTTGAGGTGATTGTCTTTGACACGCGCAAGCCAAAATATATGGGAACTATATTTGAAAAGAAGCAAAATACAGAGACTCTAGAAGGTAGAGAGTGCGCAAACAATCTTCAATCGAATCTTTTTTCAGGAGTGAAGCTCACTACAATCTTTTCTGTTACAAACCAAATGCAAACCCTCTTAAACCCTTCTCATTTCTTCACCTTCCCCAACCTCCCAACCTCTCGGAGCTCCAATTCTCCTCATTCTTGCTTTCAATGGCGTCCTCTCCTCTGTCCACCGCTTACTTTTCCCGGTAAATTCAATGTAAAGTGCTTCAGCTCAGACGAGTTCCCTGTGGACGAGTCCTTCCTCGAGAACTTTGGTCCGAAAGACAAGGAAACAGAGGACGAAGCTCGCAAGCGTAACTGGGTTGAGCGCGGTTGGGCGCCCTGGGAAGAAGTCTTCACTCCAGAAGCTGATTTTGCGCGGAAGAGTTTGAATGAAGGCGAGGAAGTGCCGCTTCAGACTCCTGAGGCGATTGAAGCCTTCAAAATGTTGAGCCCAAAGTACCGGAAGCAGAAGATGGAGGAAATGGGGTTGACGGAGGATGACTATTACCGCACGCAATGCGAAATTAAAGGCGAGATACCGGAGCCTCTTGAGACGACGTGGACTAGGCCGCTGGTCCTTCAAGTGGTTCCTCCACGGGACTGGCCTCCGAGGGATTGGGATGTTGATAGAGAAGAGCTGGAATTTATTAGGGGAGCGCACAAATTGCAAGCTGTGAGGGTGGATTTGGATCGACTTGAGAAAGATGTGAGGACGGATACTGAAGATTTGTGTTTGGACAGATACAAAGTGTTTTTGAAACAGTACAAGGAGTGGGTTGCTGCGAATAAAGATAGATTGGAGGAGGAGTCCTACAAGTACGACCAAGATTATCATCCTGGTAGGAGGAAAAGAGGGAAGGACTATAAAGAAGGCATGTATGAGCTTCCGTTTTATTATCCAGGACAAGCAAAGCGAGATCCCTACCGGTTTCGATTTCCTATTGAAATGCGTTTTGTTCATCCTAATATAGATCACCTAATATTTGACTACCCACCAATATTCCACCGTGATGAAGACAGTAATCCAGATGAAGTGCGGCGTGATTGTGGAAGACCTCCTATTCCTAGAAAAGATCCAGGAATTAAACCAGAAGACGAAGCCTTATTGTCAAATCATCCATACGTTGATAAGCTGTGGCAAATACATGTTGCGGAACAAATGATTTTGGATGATCTGGAGATGAATCCTGATAAGTATAGGGACAAAAAACTTTCAGAGTTATCTGATGAAGAAGATTTTGATGAAGAAAACGATATTGAATATACCAAAGTACGTTATAATAACAGCTTATTACCCAAGAAGATTCTGAAAACAAGTGTCAAAGAACTTGATTTGGAGGCAGCCTTTTCTGAGCGTCAAGTTCACAATAAACTAAGACAAGAAGCACAGGGTAGAGGAGAGGAGTACAAAATTACTAAATTGAGACGGAATATTGAAATGGATGAATATGACCTCATGCATTGGCGTAGATCTTTTGAGGAAAGAGAAGCATTAATCAGAGATATTAGTTGGCTATCTTTTGAGCTCCGGCAAGCTCTTGGTCTCCCACTGGAAGAACCTGGAAGATATGTAGATGCTAGTTACTTCGGGAAGGATCAATATGACCCATCAAACCCTCTCTATCGGTATGACTACTGGGGTGAACCCAAGAATTCAGAGAAGAGCAAACAAGAACGGATGACAGATGCCCACAACAAATCCATAGTAGGCAAAGGTGTTGTTTGGTATGAAATGTCGTACGAGGATGCGATTAAGGAGAGGATGGAAAGAGAAGCTCGTTCGAAGGTTGCAAAAGTAGATGTCATAGACAAAGATGAAGACGAAGAGGATGACGACGACGACGATGACGACTTTGATTTCAGTATTTTACGTGACTCAGTAGATGAACTTTCGACCCAGCCTCACGTGAATGGGACTGAATCATCTAGAATTTCGGATGAGGGTATGTTTGAGGATTAG 3033 42.7 MPVGIVKARRRVGVVGMQKAKEVSLISTKELCLPSEEPENEKRFDRSVDSISQLPQDILVFILSLLPLKEGARTSTLSHRWICLWSYIPCLNFDAQKKLFDLQLTEKNLESEGRHYVKCVNQVIDSYKGSNLETLRIRFSLDSRFQCDVHKWVQFAIQWNLKMFELNLLDSYDSGNYSPCSFPWLSGGPKEHFPRVMFSNSSSLTTLKLIAVNVVGEALECFLTNCPLLEENKGFRKWPILANLKELELIVIAEGHSSLIGFTSLIKASPCLLKFTLKLDYLDMFEQRALRKVRKFPHQHIKVVELAGFVGKPIDLELVQYFYKNAVALEVIVFDTRKPKYMGTIFEKKQNTETLEGRECANNLQSNLFSGVKLTTIFSVTNQMQTLLNPSHFFTFPNLPTSRSSNSPHSCFQWRPLLCPPLTFPGKFNVKCFSSDEFPVDESFLENFGPKDKETEDEARKRNWVERGWAPWEEVFTPEADFARKSLNEGEEVPLQTPEAIEAFKMLSPKYRKQKMEEMGLTEDDYYRTQCEIKGEIPEPLETTWTRPLVLQVVPPRDWPPRDWDVDREELEFIRGAHKLQAVRVDLDRLEKDVRTDTEDLCLDRYKVFLKQYKEWVAANKDRLEEESYKYDQDYHPGRRKRGKDYKEGMYELPFYYPGQAKRDPYRFRFPIEMRFVHPNIDHLIFDYPPIFHRDEDSNPDEVRRDCGRPPIPRKDPGIKPEDEALLSNHPYVDKLWQIHVAEQMILDDLEMNPDKYRDKKLSELSDEEDFDEENDIEYTKVRYNNSLLPKKILKTSVKELDLEAAFSERQVHNKLRQEAQGRGEEYKITKLRRNIEMDEYDLMHWRRSFEEREALIRDISWLSFELRQALGLPLEEPGRYVDASYFGKDQYDPSNPLYRYDYWGEPKNSEKSKQERMTDAHNKSIVGKGVVWYEMSYEDAIKERMEREARSKVAKVDVIDKDEDEEDDDDDDDDFDFSILRDSVDELSTQPHVNGTESSRISDEGMFED 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26554135 26566200 + Lsi06G016220.1 Lsi06g01622 666352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01622 1010 MobiDBLite consensus disorder prediction 984 1002 - -
Lsi06g01622 1010 Pfam FBD 299 331 IPR006566 -
Lsi06g01622 1010 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 661 996 IPR044967 GO:0000427|GO:0003723
Lsi06g01622 1010 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 426 660 IPR044967 GO:0000427|GO:0003723
Lsi06g01622 1010 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Lsi06g01622 1010 MobiDBLite consensus disorder prediction 697 721 - -
Lsi06g01622 1010 MobiDBLite consensus disorder prediction 961 980 - -
Lsi06g01622 1010 MobiDBLite consensus disorder prediction 953 1010 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01622 - - - csv:101217647 1128.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01622 Lsi-Chr6:26554135 Lsi10g01557 Lsi-Chr10:19993260 2.71E-08 dispersed
Lsi08g00064 Lsi-Chr8:1375286 Lsi06g01622 Lsi-Chr6:26554135 7.33E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g156 . . Bda06g00739 . . . . Bma12g01073 . . Cma10g00074 . Car10g00064 . Sed08g0047 . . Bhi02g00547 Tan09g2351 Cmetu02g1227 . Hepe09g0066 . . Cla06g01727 Cam06g1917 Cec06g1967 Cco06g1971 Clacu06g1873 Cmu06g1815 Cre06g2630 . . . Cone19ag0195 . . . . . Blo15g00218 . . Bpe07g00880 . . . . Cmo10g00073 . . . . . . . . . . . . . . . . . . . . . Lsi06g01622 Csa01g00074 Chy02g02645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011208 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01622 Lsi_Chr06 FPKM 30.677456 31.245203 31.968332 32.706791 29.027781 28.687405 28.654879 15.503661 16.516748 13.991444