Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01625 ATGGTTTTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAATTTGCTGGACAGAAGGAATCACGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGAAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTATTAGTATGAATGCAGATGGTTACGATTGTTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTCCGACTGCTGCAAAAAAAAGCTTCTAATGTTAGCTCAATTTTTGCCGTTTCATCATCTACCAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTTTCTGAGGTATCGGTTCCTCCTGCTAAAAAGCTACTGCCCTCTGGGCGCAATGTCCCTTCTGCTAAAAGAAGCTCATCTGGGCGTTTTGAGTCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCGTCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACATTCGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTTATAAAGCATCCGATGGATCTGGGGACCGTGAAGTCTAAGATTACTGCAGGAGAATACACACATCCGTTGGATTTTGCTGCTGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCCGGGAATGACGTTCATACCATGGCTAAGACACTCAGTAAATTTTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTGACAACTGAGGAACAACGTCAAGTACCTTCAGCCACTATTGTTCCTAAAGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATCCCTACAAATGACCCCGATGTTCTGCCGAACAGTGTGGTAAAAATCATGACCGACCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTGGGGGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACCTTGTTTGCATTGAGAAAGCTATTAGACAATTATATGATGGAAAAGCAGAAACGCACAAAGGCTGAACCATGTGTAGTGGAGCTTCATAACGAATCGGGATTTAGTAATTCATCAATGCCACCCAGTAAAGGAAACGATCCCATTGATGAGGATGTTGACATTGTTGGTGGGAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAAAAAGATGCAGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCAAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTATCGGGAAGTGAGTCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCAGAAGCAGTGCGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGAGATTGGTCTAGTTGAGCAAACCGCCCAGGCCAATACAAACACTATCGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACAATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGATATTTCTGTTAGAAAGTCACCGACTGACTTGGCTACAGGGTGACAAACGGGATCCTGAAAAACTGCGACTGGAAAGGGAAGAACTAGAAAGACAGCAAAGAGAAGGTTGGAGTCTTTACTTCACGACGGGACTGGACATAATCACACTAGAGAAAGTAGAGTGTGATCAAAAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCAGCGGCTGAAGCTAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTAAAGATGGAGAAGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCCAACGACGAGCATCTACCAAACTTCACAGAGGAGTCAAGCCCAGAACATTCTCAGAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTAGAACAACTTGGTTTGTACATGAAGGTGGATGAGGAAGATGAAGAGGAAGAAAGTGAACCACCCCAAAGTGTTAATAAGCCAACAAATGATGTTGAAGAAGGGGAAATCGATTAA 2472 42.96 MVLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRISMNADGYDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRLLQKKASNVSSIFAVSSSTNIQSSSDQHRGAPPETFNRFSEVSVPPAKKLLPSGRNVPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTTEEQRQVPSATIVPKETESTLPVPPSKKTKIPTNDPDVLPNSVVKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDNYMMEKQKRTKAEPCVVELHNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDQKQCELGDLEIGNYEENEIGLVEQTAQANTNTIESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKIFLLESHRLTWLQGDKRDPEKLRLEREELERQQREGWSLYFTTGLDIITLEKVECDQKKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEEESEPPQSVNKPTNDVEEGEID 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26566199 26572030 - Lsi06G016250.1 Lsi06g01625 666355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01625 823 CDD Bromo_plant1 213 310 IPR037377 -
Lsi06g01625 823 MobiDBLite consensus disorder prediction 765 784 - -
Lsi06g01625 823 Coils Coil 114 134 - -
Lsi06g01625 823 Pfam Bromodomain extra-terminal - transcription regulation 367 428 IPR027353 -
Lsi06g01625 823 PANTHER TRANSCRIPTION FACTOR GTE8 33 665 - -
Lsi06g01625 823 Coils Coil 682 723 - -
Lsi06g01625 823 Gene3D - 362 438 IPR038336 -
Lsi06g01625 823 SUPERFAMILY Bromodomain 192 318 IPR036427 GO:0005515
Lsi06g01625 823 MobiDBLite consensus disorder prediction 175 201 - -
Lsi06g01625 823 Pfam Bromodomain 216 300 IPR001487 GO:0005515
Lsi06g01625 823 MobiDBLite consensus disorder prediction 450 533 - -
Lsi06g01625 823 PRINTS Bromodomain signature 227 240 IPR001487 GO:0005515
Lsi06g01625 823 PRINTS Bromodomain signature 259 277 IPR001487 GO:0005515
Lsi06g01625 823 PRINTS Bromodomain signature 277 296 IPR001487 GO:0005515
Lsi06g01625 823 PRINTS Bromodomain signature 243 259 IPR001487 GO:0005515
Lsi06g01625 823 MobiDBLite consensus disorder prediction 335 356 - -
Lsi06g01625 823 Gene3D - 194 329 IPR036427 GO:0005515
Lsi06g01625 823 PANTHER TRANSCRIPTION FACTOR GTE10 688 807 - -
Lsi06g01625 823 PANTHER TRANSCRIPTION FACTOR GTE10 33 665 - -
Lsi06g01625 823 MobiDBLite consensus disorder prediction 758 823 - -
Lsi06g01625 823 PANTHER TRANSCRIPTION FACTOR GTE8 688 807 - -
Lsi06g01625 823 ProSiteProfiles NET domain profile. 357 438 IPR027353 -
Lsi06g01625 823 ProSiteProfiles Bromodomain profile. 224 296 IPR001487 GO:0005515
Lsi06g01625 823 SMART bromo_6 205 315 IPR001487 GO:0005515
Lsi06g01625 823 MobiDBLite consensus disorder prediction 499 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01625 - - - csv:101217420 1288.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01625 Lsi-Chr6:26566199 Lsi07g00301 Lsi-Chr7:3230984 4.88E-47 dispersed
Lsi01g00196 Lsi-Chr1:1861508 Lsi06g01625 Lsi-Chr6:26566199 9.76E-11 transposed
Lsi04g00717 Lsi-Chr4:6571325 Lsi06g01625 Lsi-Chr6:26566199 4.28E-12 transposed
Lsi06g01625 Lsi-Chr6:26566199 Lsi07g01461 Lsi-Chr7:21274609 1.11E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01625 Lsi_Chr06 FPKM 5.599825 5.008141 9.478634 8.300578 6.551459 5.588268 6.636825 8.071342 8.664752 10.735559