Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01628 ATGAAATACGTTGCTGGAAATGCATTTCATATTGTTGGTGCACATACTGATAGCCCTTGTTTAAAATTGAAGCCTATAAGCAAGACTCAAAGATACTCAAATCTTGTGCAGATTACAAAGGGTGGATTTCTGGAAGTTGGGGTTCAAATATATGGGGGTGGGTTGTGGCACACATGGTTTGATCGAGACTTAACACTTGCAGGAAGGGTGATTTTAAGGGAGGAAAATAATGGTTCTGTTTCACATGCTCATCGTCTTGTTCGATTTCTGGAGCCCATATTGAGAATCCCCACACTAGCAATTCACTTGGACAGGGATTCAGTTGCATTTGCGGTGAACACAGAGACCCAACTTCTCCCTATTTTGGCAACAACGATTAAGGGGGAGTTGAATAAAGTTGTTACCAAAAACGATGCACAAAATGACAAAGAGAAAACAGATCAGAAGTCAACTCCTACTAGCTCAAAGCATCACTTGCTTCTATTACAGCTACTTGCGGAGCAACTTGGCTGTGAACCAGATGACATATTTGATTTTGACTTGCAAGTGTGTGATGCTCAACCAAGTGCACTGATTGACAGTACGTCTTCTGAAAGTAGCCTTGAGGATGAGCCTGGTATCAGAATGGTGGCCTTGTTTGACAACGAGGAGGTTGGATCTGATTCAGCCCAAGGGGCTGGCTCTCCAGCAATGCTTAATGCTTTATCACGAATTACGACCTCCTTTAGCTCATACCCTTCGCTGGTTGAAAAAGCTATTCAGAAAAGTTACCTGGTCTCTGCTGATATGGCCCATGCATTACATCCTAATTATATGGAAAAGTACGAAGAAAATCATCGGCCTAAGTTCCATGGAGGACTGGTCATCAAGAACAATGCAAATAATAAATATGCAACTAATGCAGCCACCTCAGCCATATTCCGGGAATTAGCTATAAGACATAACCTTCCTGTGCAGGAATTTGTGGTTCGCAATGACATGGCTTGTGGCACCACCATTGGGCCCATCCTTGCAAGTGGGTTAGGTATACGAACCGTGGACGTGGGAGCGCCACAGCTATCAATGCACAGTATTAGAGAAGTTTGTGGTACTGATGATGTTGATTACTCCTATCAGCATTTCAAGGCTTATTTCGAAGAGTTCTCAAATCTTGATACCATCCACGTCGATATCTAG 1176 43.03 MKYVAGNAFHIVGAHTDSPCLKLKPISKTQRYSNLVQITKGGFLEVGVQIYGGGLWHTWFDRDLTLAGRVILREENNGSVSHAHRLVRFLEPILRIPTLAIHLDRDSVAFAVNTETQLLPILATTIKGELNKVVTKNDAQNDKEKTDQKSTPTSSKHHLLLLQLLAEQLGCEPDDIFDFDLQVCDAQPSALIDSTSSESSLEDEPGIRMVALFDNEEVGSDSAQGAGSPAMLNALSRITTSFSSYPSLVEKAIQKSYLVSADMAHALHPNYMEKYEENHRPKFHGGLVIKNNANNKYATNAATSAIFRELAIRHNLPVQEFVVRNDMACGTTIGPILASGLGIRTVDVGAPQLSMHSIREVCGTDDVDYSYQHFKAYFEEFSNLDTIHVDI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26584536 26589844 + Lsi06G016280.1 Lsi06g01628 666358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01628 391 SUPERFAMILY Aminopeptidase/glucanase lid domain 37 182 - -
Lsi06g01628 391 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 9 25 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 213 231 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 256 272 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 345 360 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 Gene3D Zn peptidases 184 390 - -
Lsi06g01628 391 CDD M18_DAP 2 379 - -
Lsi06g01628 391 Pfam Aminopeptidase I zinc metalloprotease (M18) 190 378 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 SUPERFAMILY Zn-dependent exopeptidases 3 379 - -
Lsi06g01628 391 Gene3D Aminopeptidase i, Domain 2 20 183 IPR023358 GO:0004177
Lsi06g01628 391 PANTHER ASPARTYL AMINOPEPTIDASE 2 190 IPR001948 GO:0004177|GO:0006508|GO:0008270
Lsi06g01628 391 PANTHER ASPARTYL AMINOPEPTIDASE 190 386 IPR001948 GO:0004177|GO:0006508|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01628 K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21] - csv:101216946 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01628 Lsi-Chr6:26584536 Lsi06g01629 Lsi-Chr6:26590514 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01628 Lsi_Chr06 FPKM 8.817988 7.868944 6.105401 6.069232 8.191699 7.652306 9.089248 12.464478 12.041445 13.334943