Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01631 ATGGCGGCATGTCTCTCTGGTTTCTGTCCCATGACGTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGCCCATGGCCTTGACGAAATTGGGCAGAACACGGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCAGTCTCCGAAGGGCTCATGACTGATGAGTTGAGGAGTTTTTTGGAAATTAACCTTCCAAAAGTTAAGGATGGTAAGAAGGCCAAGTTTGTTTTGGGATTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAACGAGTTTGTTCTGGAGCTGCTTCGGGGTGTGCGTCTACACTTTGACAAATTTATCAAAGACCTCAAGCCAGGGGATTTGGAGAAGGCCCAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAACCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTTGACACTTTAGATAAGGACATCAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCATGGCATTTCCCTGAGTTGGTGAAGATTGTGAGTGACAATTATCTTTATGCTAAAGTTGCTAAATTTATCGAGGACAAGTCGAAGTTGGCAGAAGATAAAATCCCTGCCTTGACTGACATAATTGGTGATGAAGATAAAGCGAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCTATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTCAATACAGGAAGAAGCTTTATGATTATTTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCGGGCAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTTGGTGCTGAGAAAGCACTGTTCAGGGCTTTGAAAACAAAAGGAAACACTCCTAAGTATGGTCTGATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCAAGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAACAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGCACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGCCTCGACTTTTACGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCTAAAGCTAATACGAACGGTGAACTTGAAGACAGGCCAAGTGCTACTGAAAACGGTGATGTTGCTGAGGATACAAAATCAGAAAAGAAGAAAAAGAAGGAAAAGCGAAAGTTGGATAGGGAAACAGAGGAACAGCAACCAGCTTCAGAAATCGTAAATGGAGTTAATGGCGAGGAAGAAGCAGGCAAGAAGAAGAAGAAAAAGAAGGGCAAGGATGAAAGTAAGGAGGATGTTGAAGTTGCTGCAGATGATGGGCAAAAATGGGATGGGACATATGCAAAAATGGCCGCTGTTGAAGTTTCAAAAGTTGGAGGTTTCGAAAAAGAAAGAGAGCAGCTTAAATCTCGTAAACCTCATTGGGGGCTCCACGACGACGACCAAACAGCCATGACCAGTAGTTCTGGATCAGCGAGCTTAGAAGATGTCCCCTCCATCCATCTCATGACCGAGCTCCTCCGTCGCATGAAATGCGCTTCAAAACCCGACAAGCGCCTCATCCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCTCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCAACTGGTGATATGTTAAGAGCTGCTGTTGCTGCTAAAACTCCACTTGGTATTAAGGCTAAGGAGGCCATGGACAAGGGTGAACTTGTGTCTGATGACTTGGTTGTTGGCATCATTGATGAAGCAGTGAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCGAGAACCGTGGTCCAAGCACAGAAGCTGGATGAGATGCTAGAGAAACAGGGTGCAAAAATTGATACGGTGCTTAATTTTTCCATTGATGATGCGATCTTGGAGGAGAGGATTACTGGAAGATGGATACACCCATCCAGCGGAAGGTCTTATCACACCAAATTTGCTCCTCCAAAGATTGCCGGTGTTGATGATGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAGCCGGTGATTGATTACTATTCCAAGAAGAAAATTGTCTCCGATCTTCAAGCAGAGAAGCCTCCCAAACAGATACTATGGGTAGTGAAATTCTATGTTTTCTTGGAATCTCTTTATTGA 2514 44.23 MAACLSGFCPMTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKDGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSQYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANTNGELEDRPSATENGDVAEDTKSEKKKKKEKRKLDRETEEQQPASEIVNGVNGEEEAGKKKKKKKGKDESKEDVEVAADDGQKWDGTYAKMAAVEVSKVGGFEKEREQLKSRKPHWGLHDDDQTAMTSSSGSASLEDVPSIHLMTELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAVKKPSCQKGFILDGFPRTVVQAQKLDEMLEKQGAKIDTVLNFSIDDAILEERITGRWIHPSSGRSYHTKFAPPKIAGVDDDDTAAVLKSRLEAFHKQTEPVIDYYSKKKIVSDLQAEKPPKQILWVVKFYVFLESLY 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26603737 26611286 - Lsi06G016310.1 Lsi06g01631 666361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01631 837 ProSitePatterns Adenylate kinase signature. 710 721 IPR033690 -
Lsi06g01631 837 Pfam Adenylate kinase 634 809 - -
Lsi06g01631 837 MobiDBLite consensus disorder prediction 444 461 - -
Lsi06g01631 837 Pfam snoRNA binding domain, fibrillarin 188 420 IPR002687 -
Lsi06g01631 837 TIGRFAM adk: adenylate kinase 631 824 IPR006259 GO:0004017|GO:0005524|GO:0016776
Lsi06g01631 837 MobiDBLite consensus disorder prediction 524 549 - -
Lsi06g01631 837 PANTHER BNACNNG34340D PROTEIN 13 544 - -
Lsi06g01631 837 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 13 544 IPR045056 GO:0030515|GO:0031428|GO:0032040
Lsi06g01631 837 PRINTS Adenylate kinase signature 661 675 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 PRINTS Adenylate kinase signature 710 726 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 PRINTS Adenylate kinase signature 779 794 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 PRINTS Adenylate kinase signature 796 810 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 PRINTS Adenylate kinase signature 633 646 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 ProSiteProfiles Nop domain profile. 306 424 IPR002687 -
Lsi06g01631 837 Gene3D Nop domain 310 422 IPR042239 -
Lsi06g01631 837 SMART NOSIC_2 181 233 IPR012976 -
Lsi06g01631 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 811 IPR027417 -
Lsi06g01631 837 Gene3D - 152 309 - -
Lsi06g01631 837 MobiDBLite consensus disorder prediction 586 605 - -
Lsi06g01631 837 Pfam Adenylate kinase, active site lid 756 782 IPR007862 GO:0004017
Lsi06g01631 837 Gene3D - 603 828 IPR027417 -
Lsi06g01631 837 MobiDBLite consensus disorder prediction 469 513 - -
Lsi06g01631 837 Pfam NOP5NT (NUC127) domain 15 80 IPR012974 -
Lsi06g01631 837 MobiDBLite consensus disorder prediction 444 549 - -
Lsi06g01631 837 Hamap Adenylate kinase [adk]. 630 828 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lsi06g01631 837 SUPERFAMILY Nop domain 174 423 IPR036070 -
Lsi06g01631 837 CDD ADK 631 823 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01631 K14564 NOP56; nucleolar protein 56 - csv:101216223 955.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00536 Lsi-Chr4:4961347 Lsi06g01631 Lsi-Chr6:26603737 3.03E-18 dispersed
Lsi06g01631 Lsi-Chr6:26603737 Lsi11g00478 Lsi-Chr11:5048834 1.85E-101 dispersed
Lsi02g00488 Lsi-Chr2:4130925 Lsi06g01631 Lsi-Chr6:26603737 2.20E-110 wgd
Lsi06g01631 Lsi-Chr6:26603737 Lsi07g01465 Lsi-Chr7:21321311 1.13E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01631 Lsi_Chr06 FPKM 15.879391 17.622503 15.706822 17.989151 11.348787 10.780661 13.192511 16.818844 15.432893 17.354792