Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01632 ATGTTATTTTTCGTCGATAAAAGGCCCCTCATGCAGCCAGGAATCCATGAGTCGGAAATTGTAACTTGCTCATATCAGCTCTTTTCGTGGAGCACGAGTGAGACGAGAATCCTGACTCGTCCGCCGCCGTTCCGGCGAAAAGCTTCTCTCAAGCTTCCCGTTTCATCCCCATCATCTTCTTCCTCACTCTCTGCCTTTTCAATTTGGTACGCAAACTCTTCTCACTCTCCTATTTTTCGCATTTCAATTCAAATCACCTCGTCCATTCATTACAACTTCCCCACGACGGCGGCTTTGTCAATTCAAGGATTCTTTGACGTTATTAAAGGGATGGGAGAAGTTAGCGTTGCGTATACCAACGGTGTGATGCCTGCTAGATTGAACAAAGTTGTTTTAGCTTATAGCGGTGGCTTGGACACATCGGTTATCGTACCATGGTTGAGGGAGAAATACGGGTGTGAGGTGGTTTGCTTCACTGCTGATGTTGGGCAAGGAGTGATGGAATTGGATGGTTTGGAAGCAAAGGCGAAAGCAAGTGGAGCTTGTCAACTTGTTGTGAAAGACCTGAGGGAAGAATTTGTGGAAGACTACGTGTTTCCCTGCTTGCGAGCTGGTGCCATTTATGAAAGGAAATACTTGCTTGGAACTTCCATGGCTCGCCCTGTCATCGCCAAGGCTATGGTGGATGTTGCCAAAGAAGTTGGAGCTGATGCTGTTGCTCATGGTTGCACAGGGAAAGGAAATGATCAGGTACGGTTTGAACTCACATTCTTTGCTCTGAACCCCAAACTACGTGTTATAGCTCCCTGGAGAGAATGGGACATTACAGGAAGAGAGGATGCTATTGAATATGCCAAGAGGCATAACGTGCCGGTCCCCGTCACGAAGAAATCGATATACAGTCGAGACCGGAATATTTGGCACCTTAGTCATGAGGTAATTGTGATGACAGCCGGTTGGTTTTACTGGTTAACATCAAGTATATTGTTTCATGATATACAGATTGAATTTGGCTGTCATTTAGATGTTGAAATTGTTGGTGACGTTTTGGAAGATCCTGCTAATGAGCCAAAGAAGGATATGTTCATGTTATCCGTTGATCCCGAGGATGCGCCTAACCAACCCGAATATGTTGAAATTGAAATTGTCTCAGGACTTCCTGCAGCTGTCAATGGGAAAAAGCTGTCACCAGCTTCCCTTCTCGACAAACTCAACGAAATCGGCGGGAAACACGGCATCGGGCGAGTCGACATGGTCGAAAACCGTCTCGTCGGCATGAAAAGCCGCGGCGTGTACGAAACACCAGGAGGAACCATCCTATTCACAGCTGCACGAGAACTCGAATCCTTAACACTCGACCGCGAAACCATACAAGTCAAGGACTCACTCACCCTCAAATACGCCGAGCTGGTGTACGCAGGGCGATGGTTCGACCCACTTCGTGAAGCCATGGATGGATTCATGGAGAAGATAACCGCAACAACCACCGGAACGGTCACACTCAAACTGTACAAAGGCTCGGTGACCGTAACGGGGCGCAAAAGTCCAAACAGCCTGTATAGACAAGACATATCCTCATTTGAGAACGGGGATGTGTACAACCAAGCTGATGCTGCTGGATTCATTCATCTCTACGGCCTCCCAACAAGAGTCCGAGCAATGCTTGAACAAGGAATCTAA 1680 47.38 MLFFVDKRPLMQPGIHESEIVTCSYQLFSWSTSETRILTRPPPFRRKASLKLPVSSPSSSSSLSAFSIWYANSSHSPIFRISIQITSSIHYNFPTTAALSIQGFFDVIKGMGEVSVAYTNGVMPARLNKVVLAYSGGLDTSVIVPWLREKYGCEVVCFTADVGQGVMELDGLEAKAKASGACQLVVKDLREEFVEDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFFALNPKLRVIAPWREWDITGREDAIEYAKRHNVPVPVTKKSIYSRDRNIWHLSHEVIVMTAGWFYWLTSSILFHDIQIEFGCHLDVEIVGDVLEDPANEPKKDMFMLSVDPEDAPNQPEYVEIEIVSGLPAAVNGKKLSPASLLDKLNEIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRETIQVKDSLTLKYAELVYAGRWFDPLREAMDGFMEKITATTTGTVTLKLYKGSVTVTGRKSPNSLYRQDISSFENGDVYNQADAAGFIHLYGLPTRVRAMLEQGI 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26619792 26625298 - Lsi06G016320.1 Lsi06g01632 666362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01632 559 ProSitePatterns Argininosuccinate synthase signature 1. 133 141 IPR018223 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 CDD Argininosuccinate_Synthase 130 548 IPR023434 GO:0004055
Lsi06g01632 559 Gene3D Argininosuccinate synthetase, chain A, domain 2 340 558 IPR024074 GO:0004055
Lsi06g01632 559 Gene3D HUPs 129 299 IPR014729 -
Lsi06g01632 559 PANTHER ARGININOSUCCINATE SYNTHASE 126 313 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 PANTHER ARGININOSUCCINATE SYNTHASE 345 557 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 Hamap Argininosuccinate synthase [argG]. 127 557 IPR023434 GO:0004055
Lsi06g01632 559 Pfam Arginosuccinate synthase 345 551 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 Pfam Arginosuccinate synthase 131 314 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 ProSitePatterns Argininosuccinate synthase signature 2. 242 253 IPR018223 GO:0004055|GO:0005524|GO:0006526
Lsi06g01632 559 Gene3D Argininosuccinate synthetase, chain A, domain 2 190 314 IPR024074 GO:0004055
Lsi06g01632 559 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 343 557 IPR024074 GO:0004055
Lsi06g01632 559 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 128 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01632 K01940 argG, ASS1; argininosuccinate synthase [EC:6.3.4.5] - csv:101215982 789.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00491 Lsi06g01632 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00495 Lsi-Chr2:4201577 Lsi06g01632 Lsi-Chr6:26619792 0 dispersed
Lsi02g00491 Lsi-Chr2:4160345 Lsi06g01632 Lsi-Chr6:26619792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g140 . . . . . . . Bma12g01077 Cmo13g00830 Cmo18g00206 . Cma11g00044 Car10g00059 Car11g00039 Sed08g2445 Cpe20g00313 Cpe04g01606 Bhi02g00535 Tan09g2357 Cmetu12g1017 . Hepe09g0059 . . Cla06g01732 Cam06g1923 Cec06g1973 Cco06g1977 Clacu06g1879 Cmu06g1821 Cre06g2636 Cone2ag0966 Cone16ag0026 . . Lsi02g00491 Csa01g00954 Chy12g01178 Cme12g01598 . Blo15g00214 . . . . . . . Cmo10g00068 Cmo11g00044 Cma13g00797 . Car13g00646 Car18g00222 Cpe09g00969 . . . . . . . . . . . . . . . Lsi06g01632 Csa01g00067 Chy02g02653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01632 Lsi_Chr06 FPKM 3076.986572 3294.543701 518.065735 527.960754 24.176376 20.663473 22.052597 3.032 2.478304 2.099385