Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01633 ATGCAATTAGAATTTTTGGGCGGTTCTTCCGTCCTCAGTTCACCACATTCAGCTCCTTACAAGCAGAGGATGGCATCATTTGGCGCTCTTTCACTATGTCCCTGCAGCCCGCTCTCACGCCCTCATCACACAGTTCGTACTGTTTATTGTTGCCGTGGATCTCCTACAGTTTTAGGAAAAAATGTCTCGAAAGTACCCCGAAAAAGACCGGGAAGATTGGAAGGTGCTAGAAGAAGCATGGAAGACTCTGTTCAACGCAAGATGGAACAATTTTATGAAGGTTCAGATGGTCCACCTCTTCGAGTTCTTCCAATTGGTGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGCTACATTCTGATTGATGCTGGCGTCATGTTTCCTGACCATGATGAGCTTGGTGTCCAGAAAATTATACCTGATACCACATTCATCAAAAGATGGAGTCACAAAATTGAAGCTGTTGTTATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGCTTATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTCGACTTAAGGTGTTTAAGATGAAAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCTGATTGTTGTGGATTAGTTCTTCGATGTGCTGATGGCACAATTCTTCACACAGGAGACTGGAAGATTGATGAATCACCATTGGATGGTAAAGTCTTCGATCGAGAAACTTTGGAAGAACTATCAAAAGAAGGAGTGACACTTATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACTATTAGTGAGTCTGTGGTGGCAGATGCACTTTTAAGACGCATCTCTGCCGCTAAAGGAAGGGTCATCACGACTCAGTTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCAGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCTTTACGGACATATCTGGATGCAGCCTGGAAAGATGGGAAGGCACCGATTGATCCATCGACCTTGGTAAAAGTGGAGGACATTGATGCCTATGCTCCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGTTATTCCTGGTAACGAATCTAGAGTGATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTACTGCACACATCTGGTCATGGATATCGTGGAGAATTAGAGGAAGTACTTCAAATTGTTAAGCCGCAGCATTTTTTACCCATTCATGGAGAGCTTTTATTCCTCAAGGAGCATGAACTGCTGGGCCGGTCGACAGGCATTCGGCACACAACTGTGATAAAAAATGGAGAAATGCTTGGAGTATCTCATCTAAGAAACAGAAGAGTTTTATCCAATGGTTTCACCTCTCTTGGGAGGGAGAATTTACAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGATCCTCATCTGAGCTTTTTGTTGATGAGAGACTAAAGATTGCAATGGATGGCATTATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTGTAGATGGTTTAAATGAGACTGGCATCAGAGGAAAACTAAGGATCACTACTCGATGTTTATGGCTTGACAAGGGGAAGCTTTTGGATGCACTTCATAAAGCCGCTCATGCAGCACTTTCAAGCTGCCCGGTGAATTGTCCTCTAGCCCACATGGAAAGAACTGTGTCGGAGCTTCTGAGGAAGATGGTTAGAAAATACAGCGGTAAGAGACCTGAAGTCATAGTCATGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAAGAGCTTGGTACAAGGCTTTCAGGCAAGTCCAATACTGGATTTGGGATGTCAGCATTGAGAAAAGCAGTTGATGGACAACCAACTAAGAGCCACTTAAACAGCATAAGACCAGATGGAAATGACGATTTGCATTCCGAGGAGTCTCAAGGCATAATCCAGATACCAGGTCGAGGGCAATGTAGGGGTTCTTATTTGGAACCTGGAAGACTACTTCCTGAAGAGGACTATGATACCTCAAACTCGAACTTGACAGAGACACAATCCTTTGATAACGAGGGTTTGGAGGATTTCTGGAGACCATTTATCACGCCATCCTCTCCTGCTAACGAATTGGCAAAGGATATCGAAGGTTCTGTTCGACAATCAAAAAATACGTTGGGGATTACAAACGAACGTGAAGAAGTTAGTGATGACAAGTCACTGAAAACACCAAATTCTGACGTGAAGCCTGTGAAACGCAATAAATGGAAACCTGAGGAGATCAAGAAACTTATTAAATTGCGGGGGGAACTGCATGCCAGGTTTCAAGTGTCCAGGGGACGAATGGCATTATGGGAAGAGATATCCAATGGTATATCGGCTGACGGAATTACTCGGAGTCCCGGACAGTGCAAATCTCTATGGGCATCTCTGGTTCAGAAATTTGAGAGGCAGTGGCAACAAAATGACGGGATGCTGAACATTGGACCCATCATTGAGAAAGCATATATGATTATTAAGAGCGATGGTGTTGGAGCCTACTTCGATTATCCGAGGCATGCTAGCATTTTTGGAGCAGAGGAATGA 2634 43.47 MQLEFLGGSSVLSSPHSAPYKQRMASFGALSLCPCSPLSRPHHTVRTVYCCRGSPTVLGKNVSKVPRKRPGRLEGARRSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIKRWSHKIEAVVITHGHEDHIGALPWLIKKRLKENGIFVPSRLKVFKMKKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHGYRGELEEVLQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGRENLQLKYSDGDKAFGSSSELFVDERLKIAMDGIIVVSMEILRPQSVDGLNETGIRGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLRKMVRKYSGKRPEVIVMAVENPGGVLSEELGTRLSGKSNTGFGMSALRKAVDGQPTKSHLNSIRPDGNDDLHSEESQGIIQIPGRGQCRGSYLEPGRLLPEEDYDTSNSNLTETQSFDNEGLEDFWRPFITPSSPANELAKDIEGSVRQSKNTLGITNEREEVSDDKSLKTPNSDVKPVKRNKWKPEEIKKLIKLRGELHARFQVSRGRMALWEEISNGISADGITRSPGQCKSLWASLVQKFERQWQQNDGMLNIGPIIEKAYMIIKSDGVGAYFDYPRHASIFGAEE 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26632587 26646532 + Lsi06G016330.1 Lsi06g01633 666363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01633 877 MobiDBLite consensus disorder prediction 746 768 - -
Lsi06g01633 877 Gene3D - 378 478 IPR036866 -
Lsi06g01633 877 Gene3D - 85 286 IPR036866 -
Lsi06g01633 877 MobiDBLite consensus disorder prediction 639 706 - -
Lsi06g01633 877 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 404 444 IPR011108 -
Lsi06g01633 877 SUPERFAMILY Metallo-hydrolase/oxidoreductase 100 464 IPR036866 -
Lsi06g01633 877 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Lsi06g01633 877 CDD GT1 770 833 - -
Lsi06g01633 877 MobiDBLite consensus disorder prediction 732 768 - -
Lsi06g01633 877 PANTHER RIBONUCLEASE J 17 376 - -
Lsi06g01633 877 PANTHER RIBONUCLEASE J 375 837 - -
Lsi06g01633 877 SMART Lactamase_B_5a 112 290 IPR001279 -
Lsi06g01633 877 Gene3D - 287 377 IPR042173 -
Lsi06g01633 877 MobiDBLite consensus disorder prediction 691 706 - -
Lsi06g01633 877 Pfam Myb/SANT-like DNA-binding domain 769 838 IPR044822 -
Lsi06g01633 877 Gene3D - 772 833 - -
Lsi06g01633 877 CDD RNaseJ_MBL-fold 103 464 - -
Lsi06g01633 877 Pfam Metallo-beta-lactamase superfamily 114 181 IPR001279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01633 - - - csv:101215740 1486.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01633 Lsi-Chr6:26632587 Lsi09g00104 Lsi-Chr9:941739 7.77E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25560 PF13837 Myb_DNA-bind_4 1.20E-11 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01633 Lsi_Chr06 FPKM 52.208504 59.871239 55.16502 56.848309 36.1726 34.889278 32.348785 38.93914 37.611931 38.395329