Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01634 ATGGAGATCAACAGTTCGGCACAGTACGATCGTGTATTGAGTTACTTCGACGAAGATGGGGACGGCAAGATTTCGCCGTCGGAGCTAAGAAATCGGCTGGGATTAATTGGCGGCGAGCTGCTGCAGGCGGAGGCTGAAGCGGCGGTGGAATCGCTCGACTCCGACGGCGATGGATTGCTGTGCGCCGGCGATTTCGAACGGTTACTGGAGGTTGGGGAGGAAGAGAAATTGAAGGATTTGAAAGAGGCGTTTGCTCTGTACGATACTGAAGGTTGCGGGTTTATAACTCCGAAGAGTTTGAAGAAAATGCTAAGAAAATTGGGGGAAACCAAATCAACTGAGGAGTGTAAATTGATGATTCGTCGCTTCGATTTGAACGGTGACGGTTTGATTAGCTTTGACGAGTTTCAGATCATGATGGCCTAA 426 49.3 MEINSSAQYDRVLSYFDEDGDGKISPSELRNRLGLIGGELLQAEAEAAVESLDSDGDGLLCAGDFERLLEVGEEEKLKDLKEAFALYDTEGCGFITPKSLKKMLRKLGETKSTEECKLMIRRFDLNGDGLISFDEFQIMMA 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26650893 26651318 + Lsi06G016340.1 Lsi06g01634 666364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01634 141 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lsi06g01634 141 Gene3D - 70 141 - -
Lsi06g01634 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 141 - -
Lsi06g01634 141 SUPERFAMILY EF-hand 9 140 IPR011992 -
Lsi06g01634 141 Pfam EF hand 12 31 IPR002048 GO:0005509
Lsi06g01634 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Lsi06g01634 141 Gene3D - 2 69 - -
Lsi06g01634 141 CDD EFh 79 141 IPR002048 GO:0005509
Lsi06g01634 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Lsi06g01634 141 Pfam EF-hand domain pair 78 140 IPR002048 GO:0005509
Lsi06g01634 141 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lsi06g01634 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Lsi06g01634 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 141 - -
Lsi06g01634 141 SMART efh_1 115 141 IPR002048 GO:0005509
Lsi06g01634 141 SMART efh_1 44 72 IPR002048 GO:0005509
Lsi06g01634 141 SMART efh_1 79 107 IPR002048 GO:0005509
Lsi06g01634 141 SMART efh_1 8 36 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01634 K13448 CML; calcium-binding protein CML - csv:101215508 240.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01634 Lsi-Chr6:26650893 Lsi09g00646 Lsi-Chr9:7207350 1.36E-28 dispersed
Lsi03g00384 Lsi-Chr3:4487367 Lsi06g01634 Lsi-Chr6:26650893 3.73E-50 transposed
Lsi04g01635 Lsi-Chr4:23836292 Lsi06g01634 Lsi-Chr6:26650893 3.11E-32 transposed
Lsi06g01634 Lsi-Chr6:26650893 Lsi07g01466 Lsi-Chr7:21333931 2.71E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g134 . . Bda06g00735 . Bpe12g00494 . . Bma12g01078 . . Cma10g00335 Cma11g00041 Car10g00318 Car11g00037 Sed08g1476 . Cpe04g01609 Bhi02g00531 Tan09g2361 Cmetu09g1801 . Hepe09g0057 . . Cla06g01734 Cam06g1925 Cec06g1975 Cco06g1979 Clacu06g1881 Cmu06g1823 Cre06g2638 Cone2ag0967 Cone16ag0022 . . . . . . . Blo15g00213 . . . . . . . Cmo10g00363 Cmo11g00042 . . . . . . . . . . . . . . . . . . . . Lsi06g01634 Csa01g00065 . Cme02g02057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000917 2 3 0 2 1 2 4 2 3 2 2 2 3 3 3 4 2 2 3 2 3 2 2 4 5 2 1 1 5 7 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01634 Lsi_Chr06 FPKM 4.092006 4.433644 7.791771 6.56364 4.816149 3.316679 5.203208 5.212407 4.707119 6.273242