Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01637 ATGGCGTCTTCCGCTTCTTCTTCTGGTCATGGCGCTTCCAAATTCCTCGGTGACCTTCCTTCCCGAGGCTTCTTCTCTTCTACCGTTCCCTCCTCAAATCCGGGAAGTATGCGAGTCTATATCTGCCTTCACGATACCTCACCGCCAGAGGATCAAGAAATCAAGACAAACCAGCAGAATATACTTATTAGATCTTTAATGCTTAAAAATTCCAGTTCAAAGGATGGAAAGGGAGTAGCTGCACCCGAGTCATCTCGAAAGAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCAAAGAGGGCTGCACAAGTCGACAACAAACAGACCAAACAGCAAATAATCATGATTTACTTTGCCATGTCCTTCTTTCTTCTCTCAAGTTCTTTATGGGCTTTCTTTCTTCTCTATCTTTTCATCTCTAAATTCTACTTCTTCTCTAGAAAGCGCTTTTACTATTCACCACCGTCTTACCCTTTCATCGGTTGCTTGATCTCCTTTTACAAAAACCGGCGCCGGCTTCTGACCTGGTACACCGATCTGCTGTCCGACTCGCCGACTCAGACCATTGTGGTGCACCGGCTCGGTTCGAGGCGGACCGTGGTGACGGCGAACCCAGCCAATGTGGAGCACATGCTGAAGACCAATTTCCTTAATTACCCTAAAGGGAAGCCGTTTACTGATATACTCGGCGATCTCCTCGGCCATGGCATTTTTAACGTCGACGGCGATTTGTGGTCCAGCCAACGGAAGCTCGCCAGTCATGCATTTTCTGCTAAGTCTTTAAGGGAATTCGTGGTTAAGACGCTTGAAGATGAAGTTCATCTCCGTTTGATTCCGTTGCTCCATAACGCTGCTCGAACTAACGCCGTCATTGATTTGCAAGATGTTTTAGGAAGACTCGCTTTTGACACCGTTTGTAAGGTGACACTAGGAACAGATGAGCAATGCTTGGACATGTCACGCTCAATTCCAAAAATAGTAAATGCATTTGATACGGCAACGGAGATCAGCGCAAAGCGGGCAATAGCGCCACTTTTTCTCACATGGAAGGCCAAACGCATGCTCAATGTTGGGTCTGAAAAGAAGCTCAAAGAAGCGGTTCAAACGGTCCACAAATGGGTCTCCAATATCATTCGTAACAAAAACCTCAATAACAACAATAACCAAATAAACAACAACGATTTGTTATCTCGTCTCTTGTCGGGTGGCCATGACGAGGAAGTTGTCAGAGATATGATCGTTAGCTTCATTATGGCCGGCCGCGACACCACCTCTGCTGCCATGACATGGCTCTTCTGGTTACTCACAAAGCACACCAAAGTCGAACATGCCATAATCAATGAAGCCAGTTCATTGTCCAACGATTCGAAAACCACGTCGTTGGATTATGGTTACGAAGAATTGAAGGATATGAAGTATTTGAAAGCGTGTTTATGCGAATCCATGCGACTATACCCACCAGTGGCTTGGGATTCGAAGCACGCAGCGGCACCGGACATTCTGCCGGACGGAACTCCGGTGAGGAAAGGAGATAGAGTCACTTATTTTCCATATGGAATGGGGCGGATGGAGGAGCTGTGGGGGGAAGACCGGCTTGAATTCAAACCGGACCGGTGGTTCCAAAACGGGGAGTTGAAAACGGTCAGTCCGTTCAAGTTCCCGGTCTTTCAAGCCGGTCCGAGGATGTGCTTGGGAATGGAAATGGCATTCATTCAGATGAAATACGTAGTGGCCACGGTTTTGAAGCGGTTTGAATTTAGACCGGCGAGTGAAAATGTGCCGGTTTTTGTCCCATTGTTGACAGCGCATATGGCGGGTGGACTACAGGTTTATGTTAGGGAAAGGGCAGAACAAAAGTCAACCATATAG 1869 47.08 MASSASSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAPESSRKRAGEKISDSRAKRAAQVDNKQTKQQIIMIYFAMSFFLLSSSLWAFFLLYLFISKFYFFSRKRFYYSPPSYPFIGCLISFYKNRRRLLTWYTDLLSDSPTQTIVVHRLGSRRTVVTANPANVEHMLKTNFLNYPKGKPFTDILGDLLGHGIFNVDGDLWSSQRKLASHAFSAKSLREFVVKTLEDEVHLRLIPLLHNAARTNAVIDLQDVLGRLAFDTVCKVTLGTDEQCLDMSRSIPKIVNAFDTATEISAKRAIAPLFLTWKAKRMLNVGSEKKLKEAVQTVHKWVSNIIRNKNLNNNNNQINNNDLLSRLLSGGHDEEVVRDMIVSFIMAGRDTTSAAMTWLFWLLTKHTKVEHAIINEASSLSNDSKTTSLDYGYEELKDMKYLKACLCESMRLYPPVAWDSKHAAAPDILPDGTPVRKGDRVTYFPYGMGRMEELWGEDRLEFKPDRWFQNGELKTVSPFKFPVFQAGPRMCLGMEMAFIQMKYVVATVLKRFEFRPASENVPVFVPLLTAHMAGGLQVYVRERAEQKSTI 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26666402 26677908 - Lsi06G016370.1 Lsi06g01637 666367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01637 622 MobiDBLite consensus disorder prediction 72 103 - -
Lsi06g01637 622 PRINTS P450 superfamily signature 419 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS P450 superfamily signature 476 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS P450 superfamily signature 563 574 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS P450 superfamily signature 554 563 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS E-class P450 group IV signature 522 540 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS E-class P450 group IV signature 563 581 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS E-class P450 group IV signature 505 519 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS E-class P450 group IV signature 471 487 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PRINTS E-class P450 group IV signature 410 436 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 MobiDBLite consensus disorder prediction 80 103 - -
Lsi06g01637 622 Gene3D Cytochrome P450 90 622 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PANTHER CYTOCHROME P450 133 613 - -
Lsi06g01637 622 Pfam Cytochrome P450 154 592 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 Pfam Det1 complexing ubiquitin ligase 14 69 IPR018276 -
Lsi06g01637 622 SUPERFAMILY Cytochrome P450 143 615 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g01637 622 PANTHER CYTOCHROME P450 94B3 133 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01631 Lsi-Chr3:27451203 Lsi06g01637 Lsi-Chr6:26666402 9.30E-50 dispersed
Lsi06g01637 Lsi-Chr6:26666402 Lsi03g01176 Lsi-Chr3:22115304 3.32E-116 dispersed
Lsi03g00109 Lsi-Chr3:1522966 Lsi06g01637 Lsi-Chr6:26666402 1.19E-138 transposed
Lsi03g01909 Lsi-Chr3:30459274 Lsi06g01637 Lsi-Chr6:26666402 6.54E-132 transposed
Lsi05g00982 Lsi-Chr5:17155109 Lsi06g01637 Lsi-Chr6:26666402 1.92E-147 transposed
Lsi06g01637 Lsi-Chr6:26666402 Lsi07g01474 Lsi-Chr7:21464729 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01637 K20665 - csv:101202989 845.884