Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01638 ATGGTAATGGCAGCGACAGAGGAAAGTCCGAGAAGCCCAGAGGCGAAGGTGGGGATGCAAGTAGAAGATTTATGGGACGTTCAAGAACCGCAGCTCAGTCCTACTGAAAAGCTTAATGCTTGCTTTGAAAGCATCCCTGTTTCAGCCTTTCCTCCTGCCCCTTCCCATCAAGGAGTTGAGATAAAATCGGACTGCAGTTTAGCTGAAGCTGTTCAAATTTTGGCTGAACATAAGATCCTCAGTGCACCTGTGGTGGACGTTGATGCACCTGATCATGCGAGTTGGATTGATAGATACATTGGTATTGTTGAGTTTGCTGGAATTGTTGTTTGGATTCTTCATCAGTCGGAACCTCCGTCCCCGAGAAGTCCTAGTGATGGAAGTGCTCTGGCTGCAGCAACAAATGGGGTGATATCTCCTTTAGAACAGCAGGTATTGGGCCCGGAAGCCGCTGCAGCGACCTCGGGGAGCTTTTTCGAATCCTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTGCGAGATATCTCAGGATCTTTCCGTTGGGCCCCATTTCTTGCTTTGCAGACGTCGAATTCCTTCTTGACCATGCTCTTACTGTTATCAAAGTACAAAATGAAGAGCATACCAGTGGTGGACCTAGGGGAGGGAAAGATTGAGAACATCATCACACAATCAGCTGTGTATGAGGATGAACCCGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTATACCTGTTATTGAAAGGAGTGGTAGGGCAGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTACAGATCGATAACGGCGAGAAACTTTCTGACTGCGGTTAGAAACTACTTAGAGAATCATGAAGAGTTCTCTCCAATGCTAAGCAACATGATCTCATGCAAGAAGGACGACACAATAAAGGATCTGATTTTGATGCTCGACTCCAAGAAGATCCACCGCGTGTATGTAGTCGATAATGATGGCAATCTGGAAGGAGTTATCACCCTCAGAGACATCATCTCGAGGTTGGTCATCTGGAATTGGGCCCAAAAGCCCAATAATGTTGAGGGCCCGATTATGGAATTTCATCCCGGGCGGTTAATATACGATATGAAATCACGGATGCGAACTGGAAGACTGCCTTCATTTCGAACCACCACGAATTGCGCGAAGATGGCACCGCACGACGTTCGCCGTCCACACAAACGGCCGGCGATCTCCGATCAGCAAAAGCGGCGGGAACTTTCTTTGCAACGGCAACAGCAGAATCGTCGCGACGCTCAGCAACAAGCGCGTTCCTTAGCCTCCACGCTCCTCTCCCTCTCATCCTCATTCAACGAGCCTAGTACCTCCGAGCCGGTGCTGGATATTGAACTGAACGAACTCGAATCCGAAACGGAATGTTCGCCGGAGCTCCTATCGGAGCGTGAATTTAACGAGCCTGCTATGAAGGAGCTCGATGTTCGCGAGGCTTCGAAGCTTAAAGGTTCAGAGGCTCGTAAGTGGTTTTCGAAGCAACTGTTGCTTCCTGAGTGGATGATAGATGTTCCTGATCGACTTAGCGAAGACTGGTACGTTTTTGCAAGGCCTTCCGGGAAACGGTGTTTCGTCGTTTCTTCCAATGGAACAACTATCAGTAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAATGGAGCAAAGACAAAGAATTCCTCTGGTTCCGGTCAAACATATTCTATTCTAGATTGTATATTTCATGAAACAGATCAAACGTACTACGTCATTGATATGATTTGTTGGCGGGGATATTCTCTTTATGATTGCACGGCCGAGTTTCGGTTCTTCTGGCTCAATTCCAAGCTTGTTGAGACTGGTGCTTGTGAGCCACCTTCATACTATCACAAATATAAATTCAGCCTGGTACCTGTATATACATGCGATCAAAATGGTCTCTATGCTGCTTATACAGGAGCAGCACCTTTTGTCAAGGATGGTCTATTGTTTTACAACAAGCATTCCCATTACCAGCCAGGAAATACACCACTTGCATTGGTCTGGAAGGATGAGAACTGCAGTCAATATGTTATTGACACAGATAGTAATGGACAAGTTCCAAGCCAACAGCAGCTGGTTTTGGAGCTACATGGTGATGGAAAGGTGGCTACATCAGATGATCCTCCTGTGGACTTTGGATGCTTAGATGGTGACTTGATCGAAAAGGTTCTTGCAGATGTTTGTAGTGGCATTATATGTTTATGTCCTTTCCATATCCTCCTCTTTGACAAGAGTTTTATGGTTAACTTGTTTATTTGGTATGTCATGAGATATACTGTTGGGAAGGTTCAAAAGAGTGTCACGAGGTTGTCTTCGGGCAATTTATTGCGATTCACCATTGGTGATGGAGGGTTGACCATTGTGGACGGGAGGATTCAGGGGGCAGATTTACAATACACTGGCAAGGTCAATCGAGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTTATGTTTCAATATGCGGCTCGTCGCTCACCTTTAAAAATAGATGATCTATTAGCATCCATCGATTCATCGAATGATGGAGGAGGTCATGATACTGAAATGGTAGGATAG 2643 45.78 MVMAATEESPRSPEAKVGMQVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPSHQGVEIKSDCSLAEAVQILAEHKILSAPVVDVDAPDHASWIDRYIGIVEFAGIVVWILHQSEPPSPRSPSDGSALAAATNGVISPLEQQVLGPEAAAATSGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVYEDEPVLQAFKLMRKKRVGGIPVIERSGRAVGNISLRDIHFLLTAPEIYHDYRSITARNFLTAVRNYLENHEEFSPMLSNMISCKKDDTIKDLILMLDSKKIHRVYVVDNDGNLEGVITLRDIISRLVIWNWAQKPNNVEGPIMEFHPGRLIYDMKSRMRTGRLPSFRTTTNCAKMAPHDVRRPHKRPAISDQQKRRELSLQRQQQNRRDAQQQARSLASTLLSLSSSFNEPSTSEPVLDIELNELESETECSPELLSEREFNEPAMKELDVREASKLKGSEARKWFSKQLLLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKNSSGSGQTYSILDCIFHETDQTYYVIDMICWRGYSLYDCTAEFRFFWLNSKLVETGACEPPSYYHKYKFSLVPVYTCDQNGLYAAYTGAAPFVKDGLLFYNKHSHYQPGNTPLALVWKDENCSQYVIDTDSNGQVPSQQQLVLELHGDGKVATSDDPPVDFGCLDGDLIEKVLADVCSGIICLCPFHILLFDKSFMVNLFIWYVMRYTVGKVQKSVTRLSSGNLLRFTIGDGGLTIVDGRIQGADLQYTGKVNRARAFADSYSKVMFQYAARRSPLKIDDLLASIDSSNDGGGHDTEMVG 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26679724 26689023 + Lsi06G016380.1 Lsi06g01638 666368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01638 880 ProSiteProfiles CBS domain profile. 219 280 IPR000644 -
Lsi06g01638 880 ProSiteProfiles CBS domain profile. 305 367 IPR000644 -
Lsi06g01638 880 SUPERFAMILY CBS-domain pair 30 228 IPR046342 -
Lsi06g01638 880 Gene3D DNA ligase/mRNA capping enzyme 393 722 - -
Lsi06g01638 880 SMART cbs_1 221 272 IPR000644 -
Lsi06g01638 880 SMART cbs_1 57 113 IPR000644 -
Lsi06g01638 880 SMART cbs_1 308 356 IPR000644 -
Lsi06g01638 880 Pfam CBS domain 305 355 IPR000644 -
Lsi06g01638 880 Pfam CBS domain 228 267 IPR000644 -
Lsi06g01638 880 Gene3D - 33 225 IPR046342 -
Lsi06g01638 880 SUPERFAMILY CBS-domain pair 228 356 IPR046342 -
Lsi06g01638 880 Coils Coil 429 449 - -
Lsi06g01638 880 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 515 698 - -
Lsi06g01638 880 CDD Snurportin-1_C 514 700 - -
Lsi06g01638 880 ProSiteProfiles CBS domain profile. 54 120 IPR000644 -
Lsi06g01638 880 Gene3D - 226 358 IPR046342 -
Lsi06g01638 880 MobiDBLite consensus disorder prediction 411 432 - -
Lsi06g01638 880 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 399 873 IPR017336 GO:0005634|GO:0005737|GO:0061015
Lsi06g01638 880 CDD CBS_pair_SF 61 267 - -
Lsi06g01638 880 MobiDBLite consensus disorder prediction 401 445 - -
Lsi06g01638 880 CDD CBS_pair_SF 220 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01638 K13151 SNUPN, RNUT1; snurportin-1 - csv:101214543 773.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00452 Lsi-Chr4:4314156 Lsi06g01638 Lsi-Chr6:26679724 1.94E-61 dispersed
Lsi06g01638 Lsi-Chr6:26679724 Lsi10g00382 Lsi-Chr10:5833990 7.91E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01638 Lsi_Chr06 FPKM 2.00651 2.162243 6.530186 6.028887 5.121667 5.023635 7.241098 7.604314 7.84539 9.474357