Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01639 ATGGCGGAGAGCTTTCCAATTCGAAACCTTCAATTCATCACTCTCGCTCTCCTCAGTATCGGCTTCCTCGCGCATAGTTACCAGATTCGCCTCGATGAACACCAGCCTCTCTCCAAAATTAATGTGTACAAGGCTACTCTTGCACTCCGAAATACCGCCTCCATTAGAGCCTCGCCGCTTGTTCTTGGCCTCAATGGCGAGGATACTGCGTGGGTGACTGTCAAGTTTATACATCCTGAACCCTCTGCAGATGATTGGATAGCAGTGTTTTCTCCTGCGAAGTTCAAGTATCCCAAGCTTATTGCTGTTTCAAATCCCTTATCATTTAAGAATCCTAAAGCACCATTGTTTCCTCGCCTTGCACATGGCAAACTGTGGAATGAAATGACAGTAACCTGGACAAGCGGGTACGATATAAGTGAAGCTACTCCATTTGTTGAATGGGGTCTAGAAGGGGAGACACAGACGAGATCCCCAGCTGGCACACTGACATTTAGTAGGAACAGCATGTGTGGTATGATTCATTCGAGCAACTCGTATACGTACAGAATGGGTCATCGCTTGCTTAGTGGATCATATATTTGGAGCAAAAGCTATTCATTCAAGTCATCACCGCATCCTGGAGAAGAATCATCACAGCGTGTCATTATATTTGGTGATATGGGGAAGGGACAACGTGATGGCTCAAATGAATATAGCAACTATCAGCCTGGAGCATTGAACACCACCGATCAGCTCATCAAAGACTTGGACAATATTGACATTATTTTCCATATCGGAGACCTATCTTATGCAAATGGGTATCTCTCAGAGTGGGACCAATTTACTGCACAGGTGGAGCCCATTGCATCTAGGGTCCCCTACATGGTTGCAAGTGGTAACCATGAGCGTGACTGGCCAAATTCTGGGTCCTTCTATGCAAACATGGATTCAGGTGGGGAATGTGGAGTTCCGGCGGAGACCATGTTCTATTTTCCTGCTGAAAACAGAGCAAAGTTCTGGTATTCGACAGATTATGGATTGTTCCGGTTCTGTATAGTTGACACTGAACATGACTGGCGAGAGGGCTCAGAACAGTACAGATTCATAGAGCAATGCCTTGCATCAGCGGATAGACAAAAACAACCTTGGTTGATATTTGCTGCTCATCGTGTGCTCGGCTACTCTTCCAACGATTGGTATGCTTCGCAGGGCTCATTCGAGGAACCCATGGGAAGGGAAAGCCTTCAGAAACTCTGGCAGAAGTATAGGGTCGATATTGCCTTCTATGGCCATGTCCATAACTACGAAAGAACATGTCCAGTTTATCAGAATCAATGCGTGAATGCAGAAAAAACGCAATATTCAGGCACTATGAATGGCACAATCCACGTAGTGGTTGGTGGAGCAGGGAGCCACTTATCCGCATTCACCCAAGAGATCCCCAAATGGAGCATTTACAGAGACTTTGATTTTGGTTTCGTAAAGTTGACATCATTCAACCGCTCCTCTCTGCTTTTCCAGTACAAGAAAAGCAGCGACGGAAAGGTTTATGATTCCTTTACCATTTCAAGGGACTACAGAGACGTCTTGGCCTGTGTTCCCGACAGTTGTGATCCCACAACTTTGGCTGCTTGA 1617 45.95 MAESFPIRNLQFITLALLSIGFLAHSYQIRLDEHQPLSKINVYKATLALRNTASIRASPLVLGLNGEDTAWVTVKFIHPEPSADDWIAVFSPAKFKYPKLIAVSNPLSFKNPKAPLFPRLAHGKLWNEMTVTWTSGYDISEATPFVEWGLEGETQTRSPAGTLTFSRNSMCGMIHSSNSYTYRMGHRLLSGSYIWSKSYSFKSSPHPGEESSQRVIIFGDMGKGQRDGSNEYSNYQPGALNTTDQLIKDLDNIDIIFHIGDLSYANGYLSEWDQFTAQVEPIASRVPYMVASGNHERDWPNSGSFYANMDSGGECGVPAETMFYFPAENRAKFWYSTDYGLFRFCIVDTEHDWREGSEQYRFIEQCLASADRQKQPWLIFAAHRVLGYSSNDWYASQGSFEEPMGRESLQKLWQKYRVDIAFYGHVHNYERTCPVYQNQCVNAEKTQYSGTMNGTIHVVVGGAGSHLSAFTQEIPKWSIYRDFDFGFVKLTSFNRSSLLFQYKKSSDGKVYDSFTISRDYRDVLACVPDSCDPTTLAA 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26690712 26698194 - Lsi06G016390.1 Lsi06g01639 666369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01639 538 Gene3D - 208 522 IPR029052 -
Lsi06g01639 538 PANTHER PURPLE ACID PHOSPHATASE 98 537 - -
Lsi06g01639 538 SUPERFAMILY Metallo-dependent phosphatases 212 529 IPR029052 -
Lsi06g01639 538 Pfam Iron/zinc purple acid phosphatase-like protein C 454 513 IPR025733 -
Lsi06g01639 538 SUPERFAMILY Purple acid phosphatase, N-terminal domain 98 205 IPR008963 GO:0003993|GO:0046872
Lsi06g01639 538 Pfam Fn3-like domain from Purple Acid Phosphatase 55 95 IPR040974 -
Lsi06g01639 538 PANTHER PURPLE ACID PHOSPHATASE-RELATED 12 96 - -
Lsi06g01639 538 PANTHER PURPLE ACID PHOSPHATASE-RELATED 98 537 - -
Lsi06g01639 538 CDD MPP_PAPs 212 518 IPR041792 -
Lsi06g01639 538 Pfam Calcineurin-like phosphoesterase 214 429 IPR004843 GO:0016787
Lsi06g01639 538 PANTHER PURPLE ACID PHOSPHATASE 12 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01639 K22390 ACP7; acid phosphatase type 7 - csv:101214303 991.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01639 Lsi-Chr6:26690712 Lsi08g00898 Lsi-Chr8:17344230 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g112 Blo04g00867 . . . . . Bma06g00081 . . . Cma10g00063 . Car10g00050 . . . . Bhi02g00516 . . . . . . Cla06g01740 Cam06g1930 Cec06g1980 Cco06g1984 Clacu06g1886 Cmu06g1828 Cre06g2643 . Cone16ag0269 . . . . . . . . . Bda14g01365 . . Bma03g01255 . . . . . . . . . . . . . . . . . Cla04g00983 Cam04g1023 Cec04g1147 Cco04g1211 Clacu04g1052 Cmu04g1039 Cre04g1093 Lsi06g01639 Csa01g00058 Chy02g02661 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007476 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01639 Lsi_Chr06 FPKM 4.470405 4.117106 8.177132 7.524584 13.870225 14.012797 13.954422 9.096361 8.735715 9.280456