Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01644 GATGATGTCATCTACTATGAAATTCTCACAACCTTAGATAGAGGCAGAGAAACGAATCGTGAAGGCTGTTACCTTATCTCAACTCTTTTCCGAGTTCATTTGGCTAACCCCTACTACAACCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCTTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGACTTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTTGCACGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGTATGATGATTGGGAGACCGGCAATGGATCCCACCGGGGTTTATGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGAGGCAGCAGCGGGCAGGGTAACCTTGATGGTCAGAGGCACAAGGAAGTCAACTCGTTCGGTTTCCGTTTCCAATCATTCCGACGAAGCTCCATTCCCAATTATCAAAACTTGATTTCTACGTCGCAGGGAATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCTAAGGATAGCGTTCGTCTCGTCAAAAGATGCCACAAGCCTGATCGCAATGGCATGTCTTTCCTTCACCTCCTTCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGGTTTTTCGTCAAATTGATCTTTATTCCGATTAACAACATAATCGTCGGATCTGGATAG 1125 50.93 DDVIYYEILTTLDRGRETNREGCYLISTLFRVHLANPYYNRRRRRPMDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQRHKEVNSFGFRFQSFRRSSIPNYQNLISTSQGMDAIDSVVDPLREFAKDSVRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26741318 26749889 - Lsi06G016440.1 Lsi06g01644 666374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01644 374 MobiDBLite consensus disorder prediction 41 64 - -
Lsi06g01644 374 Pfam Core histone H2A/H2B/H3/H4 94 165 IPR007125 GO:0003677
Lsi06g01644 374 Pfam SecE/Sec61-gamma subunits of protein translocation complex 310 370 IPR001901 GO:0006605|GO:0006886|GO:0016020
Lsi06g01644 374 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 265 - -
Lsi06g01644 374 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 48 265 - -
Lsi06g01644 374 Hamap Protein translocase subunit SecE [secE]. 306 369 IPR001901 GO:0006605|GO:0006886|GO:0016020
Lsi06g01644 374 SUPERFAMILY Histone-fold 65 174 IPR009072 GO:0046982
Lsi06g01644 374 Gene3D Preprotein translocase SecE subunit 304 373 IPR023391 -
Lsi06g01644 374 Gene3D Histone, subunit A 70 180 IPR009072 GO:0046982
Lsi06g01644 374 SUPERFAMILY Preprotein translocase SecE subunit 302 370 IPR023391 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00510 Lsi06g01644 CCT
Lsi02g00510 Lsi06g01644 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00820 Lsi-Chr3:12431968 Lsi06g01644 Lsi-Chr6:26741318 2.92E-68 transposed
Lsi04g00745 Lsi-Chr4:6935481 Lsi06g01644 Lsi-Chr6:26741318 9.07E-11 transposed
Lsi06g00137 Lsi-Chr6:1329161 Lsi06g01644 Lsi-Chr6:26741318 2.89E-67 transposed
Lsi07g00895 Lsi-Chr7:10230349 Lsi06g01644 Lsi-Chr6:26741318 2.91E-30 transposed
Lsi08g00862 Lsi-Chr8:17035733 Lsi06g01644 Lsi-Chr6:26741318 9.93E-09 transposed
Lsi10g01125 Lsi-Chr10:15493505 Lsi06g01644 Lsi-Chr6:26741318 4.29E-10 transposed
Lsi02g00510 Lsi-Chr2:4316239 Lsi06g01644 Lsi-Chr6:26741318 4.67E-39 wgd
Lsi06g01644 Lsi-Chr6:26741318 Lsi07g01480 Lsi-Chr7:21563778 1.92E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25561 PF00808 CBFD_NFYB_HMF 5.50E-17 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01644 - - csv:101213576 357.451