Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01644 | GATGATGTCATCTACTATGAAATTCTCACAACCTTAGATAGAGGCAGAGAAACGAATCGTGAAGGCTGTTACCTTATCTCAACTCTTTTCCGAGTTCATTTGGCTAACCCCTACTACAACCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAGCCCAATCCTCTCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCTTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGACTTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTTGCACGCATTAAGAAGATCATGAAAGCCGATGAGGACGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTTCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGTATGATGATTGGGAGACCGGCAATGGATCCCACCGGGGTTTATGCTCAGCCGCCGTCCCAGGCGTGGCAATCCGTGTGGCAGACCGCTGCTGAGGACGGTTCTTACGCGAGTGGAGGCAGCAGCGGGCAGGGTAACCTTGATGGTCAGAGGCACAAGGAAGTCAACTCGTTCGGTTTCCGTTTCCAATCATTCCGACGAAGCTCCATTCCCAATTATCAAAACTTGATTTCTACGTCGCAGGGAATGGACGCCATTGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCTAAGGATAGCGTTCGTCTCGTCAAAAGATGCCACAAGCCTGATCGCAATGGCATGTCTTTCCTTCACCTCCTTCAATTCACTAAAGTGGCATTCCGTACGGCAATCGGTTTCGTCGTGATGGGATTTGTCGGGTTTTTCGTCAAATTGATCTTTATTCCGATTAACAACATAATCGTCGGATCTGGATAG | 1125 | 50.93 | DDVIYYEILTTLDRGRETNREGCYLISTLFRVHLANPYYNRRRRRPMDTNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWTFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQRHKEVNSFGFRFQSFRRSSIPNYQNLISTSQGMDAIDSVVDPLREFAKDSVRLVKRCHKPDRNGMSFLHLLQFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26741318 | 26749889 | - | Lsi06G016440.1 | Lsi06g01644 | 666374 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01644 | 374 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
Lsi06g01644 | 374 | Pfam | Core histone H2A/H2B/H3/H4 | 94 | 165 | IPR007125 | GO:0003677 | |
Lsi06g01644 | 374 | Pfam | SecE/Sec61-gamma subunits of protein translocation complex | 310 | 370 | IPR001901 | GO:0006605|GO:0006886|GO:0016020 | |
Lsi06g01644 | 374 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 48 | 265 | - | - | |
Lsi06g01644 | 374 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 | 48 | 265 | - | - | |
Lsi06g01644 | 374 | Hamap | Protein translocase subunit SecE [secE]. | 306 | 369 | IPR001901 | GO:0006605|GO:0006886|GO:0016020 | |
Lsi06g01644 | 374 | SUPERFAMILY | Histone-fold | 65 | 174 | IPR009072 | GO:0046982 | |
Lsi06g01644 | 374 | Gene3D | Preprotein translocase SecE subunit | 304 | 373 | IPR023391 | - | |
Lsi06g01644 | 374 | Gene3D | Histone, subunit A | 70 | 180 | IPR009072 | GO:0046982 | |
Lsi06g01644 | 374 | SUPERFAMILY | Preprotein translocase SecE subunit | 302 | 370 | IPR023391 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00510 | Lsi06g01644 | CCT | |
Lsi02g00510 | Lsi06g01644 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00820 | Lsi-Chr3:12431968 | Lsi06g01644 | Lsi-Chr6:26741318 | 2.92E-68 | transposed | |
Lsi04g00745 | Lsi-Chr4:6935481 | Lsi06g01644 | Lsi-Chr6:26741318 | 9.07E-11 | transposed | |
Lsi06g00137 | Lsi-Chr6:1329161 | Lsi06g01644 | Lsi-Chr6:26741318 | 2.89E-67 | transposed | |
Lsi07g00895 | Lsi-Chr7:10230349 | Lsi06g01644 | Lsi-Chr6:26741318 | 2.91E-30 | transposed | |
Lsi08g00862 | Lsi-Chr8:17035733 | Lsi06g01644 | Lsi-Chr6:26741318 | 9.93E-09 | transposed | |
Lsi10g01125 | Lsi-Chr10:15493505 | Lsi06g01644 | Lsi-Chr6:26741318 | 4.29E-10 | transposed | |
Lsi02g00510 | Lsi-Chr2:4316239 | Lsi06g01644 | Lsi-Chr6:26741318 | 4.67E-39 | wgd | |
Lsi06g01644 | Lsi-Chr6:26741318 | Lsi07g01480 | Lsi-Chr7:21563778 | 1.92E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25561 | PF00808 | CBFD_NFYB_HMF | 5.50E-17 | CL0012 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01644 | - | - | csv:101213576 | 357.451 |