Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01656 ATGTCGGGCAACGTACCGCGTTTTTTTAATTTCCGTGCCTCTTACATCGCCGTAATACTAAAATCTACGTCGGACTCGACTAAGCTCACCGCGCGGTTCGCGATGGAAACCTCACAGCGGGAACCGAGTCATAGACGAGTTCCAGATGAACCAGAGCTCGATCTATACACCATTCCAAGTCACTCCAGTTGGTTTTCGTGGGATGAAATTCACGAAACAGAGAAATTAGCTTTGAAGGAGTTTTTTGATGGAAGCTCAATATCAAGAACACCGCGTATATATAAAGAATATAGAGATTTTATTATCAATAAGTACAGGGAAGAGCCTTCCAGCAGGCTTACATTCACCGAAATTCGGAAATCTCTGGTGGGGGATGTTAATTTGCTTCATAAGGTGTTTGTTTTCTTGGAGACATGGGGGCTGATCAACTTTGGCGCAACTTCGGATGATAATGATTTGGAGGAGGTGGAAGATGGAGAGAGTTATATAATTAAGATTGAAGAGGGGGTCCCCAATGGGATTCGTGTGGGAGCAATGCCAAATTCGGTGAAGCCAATTTCAGCACCGCCTGTTGTGGAAGACAGTGCTATCGTTAATGGGAGCGGGTTTAAATTGCCCCCTTTGACTTCCTATTCAGATGTTTTCAGTGACTTGTTGAAACAGAAGATTTTAGCGTGTGGGAACTGTGGCCAGCATTGTGGATCTAGATACCATCACTGCGCCAAGGATGGTTATTTACTCTGCGAAAATTGTTTCAAGGATGGAAATTATGGGGAGCAGAGGCTCTTGGAAGATTTTGAGTTGAAGACCAACGAGTTCGTTGAAGATAGTGGTAATGCTGGAGCTTTGTGGACTGAGGCTGAAACTCTACTTCTTTTGGAATCCGTTTTGAAGCATGGAGATGAGTGGGAACTCGTCGCTCAAAATGTACAAACCAAGACTAAATTGGATTGTATATTGAAACTCGTGGAGTTGCCGTTTGGGGACTTCTTGTTATGTTCTGAAGCTCAAAGGAATGAGGTTAGTGGTCCTAATAACAACGTTACTAGTGAAAAAGAAACTACAGACGCTCCACCTAACGATCAGGAGATTGCCGGGAGCGAAGACCAATGTACCAAGGACATAAACGAGGACGAAGATGAAGAGAACCAAGGTCCTCCCAAGCGACAGTGCACTGCTTCTGTTCCAGATACGAGCAGTTCTCTGATGAAACAGGTAGCTTTGATATCAAGCATGGTTGGACCACATATTATGGCAGCAGCTGCTACTGCTTCTGTTACAGCACTTTGTGACGAAAACTTATATCCAAAAGAAATCTTTGACGATGATGATTTTTTTGTACCTAATGGATTGTGTTCTGCGGCTTCCACCACATCAAATCACGAGACTGAGAGAATTCTCAATAACAAAGATTCAGTGGCAAAGGAAAGGCCTCAATCAGGTGATATAATGACCGAGGACAAAGAGGACATACCTTTAATCTTACGAGTTAGAGCTGCGATCGCAACAGCACTTGGCGCTGCTGCAGCACATGCAAAATTACTTGCTGATCAAGAAGAGAGAGAAATGGAATACTTATTGGCGATAATGATAGAAACACAGATGAAGAAGATGCAACGCAAAATTAAGCATTTTGAAGATCTCGAGCTGATCATGGAAACAGAAAGTCCTGTGATTGAGGAACTAGAAGATAAACTGTTAATGGAGCGGGTGGAAGGATTATCCTTCTTTGAGATCTTGACAACGAAAGCCACTATGACCAGAAGGCGTCTCCGCCTGAGCTGGTCTTCCGACGAAGACTTGGAACACGACGCTCACTGCCCTGATTCCTCCCCTGCCTCTCTTCAGCCTCTCATTCTAGACAATCTCAACTCTCATTTTAATCCCAACGTTTCTGAACCCCTCCAAGTTCCCGATTCCGACGACGACGAACAAGATTTTATCGACGTCTCCGACCATCTCTCCCCTCCCTCTCCGGATTCTGATCATTCTCTTCCTCACTCACCCCACCCGAATCCGCTCAGTCCTCGTCTCGCTTCCACCCACCCGCCGTGTCCTGTAAGCGAGTTCCTTCGGGGACTTGGTTTAAGCTTGAAGAGAGAGTGGTTGGATGTCTGTATCTATGCCCTACAAGGGTCTGTACCAGGTTTTTTAAGCCTCAACCCTGCGGAGAAAGGAAAGCTGTGTTTCGAGCAGTTCTTGGTTTCTGATATGAATTACGCGGGTGCTGGTGTCCTGCCTGAAAATGTTGATTCTATGCATCTTGTTGATCTCCCTGGTCCGTACGTACTGCAGGTCGATGAAATAGTTAACATCAGTTGTGCTCTAAAAGGTAGATATCAGACTGCCCCTGCGAATATTAAGAGGTGCCTTAAGCTGTCCATGACGGATGGTGTTCAACGAGTTTTTGGCATGGAATACAGGCCTATTAAGGATCTTGAAGTTTTGGCCCCTGCTGGGTTGAAGGTAGTAATCTGCAGTGTAAGTGTACGACGTGGGCTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTTGAGGAATTGGAGGCAGCTCGGAAGCGGCTTGTTGATGAAGTGAACAAGCCACCTAGAGGAAGGAGAACGAGGACAGGCGTAGTTCCTCCCTTGGCAAGCAGAGCAACACGTGCTGCATGGCCATCAGACAATGTTCAAGAGCCTGGGCATCCTAGCAGAATAGTGGATACTGAACCCTCTCGTTCAGACCAAGGTGTTCGCATGTTCCAAAGGGGAAATGAAGCATTTACTGCTCTAGTTGGTGATGCATTTACTACTCCAGTCAGTAGAACAAATGCTAACTCTGAGTTGTCTTCTAATTTTGTTTCAAATGTTGAGGAGATTCATTCACATTCCATTCCTAGTGGTAGAGCTAGCACTGAGCCTACTATTGTGTCCAATTCGGTAGAGGACACCAATGTGGTCAATTCGGTAGATGATACCAATACAGTCAATTCAGTAGACGATACCAATATGGTCAACTCGGTAGAGGATGCCATTATGGTCGATATTGAGCATCCACTCATTTTATCTGGTGATAGAGAAATTCCTTTCACTTATTTGGCTAGTTTGTCGGCTAAGTTGGCAGCAGTGAAGGAAAAATCTCCATCAGTTCGTGGAAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTTCAATTCAAGCAAAGGGCAACATACGAGCTACATGTGTATGTTGATGACGGTAGCCTCATTTCTGAGGTCCTCATTGATCACGAGGTTGTGCAAAAAGCGATTGGCCATTCTCCCAAGGATGTTACAGGGGCTCTTGATTCTTCTGACGTCAAAGTAGTGAGTGTTATGAAGGAGACCATGAGACAGTTCCAAATTTTCTTGATAAATTTTGAGGGTACAATGCTGGTTGAGATGAATAGAACGTCTTCTCTGCCAGTTGTCCTTGAGATGGCAGAGGGTTGTCCGGAATCTGATGCTCGGTTGCTTTTGAGAAGACTCACATGTTCGAATGCTGTTCCAACTGAAGAGCATACCCATATTATAGACGTCATCAACACAGCATCCAGAGGAAACGAAGTCAATTTTTTCCTGGAGGTTTCACTCGCCCCGGTTGTCAGAGGAGTGCCTAAACTGGTCGAGATTGGTCTTCTTGTTAATATCCGTGGCAGCCGAAGGGCCATAGGAAAAATTTTAGGGAATGCTACGAATGCTTGTACAACCAGCACGATTGCGGACAAACAACACAATGATTCTGGTCAGCTACAATGTCGGACAAATGTTATGGCATTGCTCTTTTTACTCTCGAACGTAAGTTGA 3819 44.96 MSGNVPRFFNFRASYIAVILKSTSDSTKLTARFAMETSQREPSHRRVPDEPELDLYTIPSHSSWFSWDEIHETEKLALKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEIRKSLVGDVNLLHKVFVFLETWGLINFGATSDDNDLEEVEDGESYIIKIEEGVPNGIRVGAMPNSVKPISAPPVVEDSAIVNGSGFKLPPLTSYSDVFSDLLKQKILACGNCGQHCGSRYHHCAKDGYLLCENCFKDGNYGEQRLLEDFELKTNEFVEDSGNAGALWTEAETLLLLESVLKHGDEWELVAQNVQTKTKLDCILKLVELPFGDFLLCSEAQRNEVSGPNNNVTSEKETTDAPPNDQEIAGSEDQCTKDINEDEDEENQGPPKRQCTASVPDTSSSLMKQVALISSMVGPHIMAAAATASVTALCDENLYPKEIFDDDDFFVPNGLCSAASTTSNHETERILNNKDSVAKERPQSGDIMTEDKEDIPLILRVRAAIATALGAAAAHAKLLADQEEREMEYLLAIMIETQMKKMQRKIKHFEDLELIMETESPVIEELEDKLLMERVEGLSFFEILTTKATMTRRRLRLSWSSDEDLEHDAHCPDSSPASLQPLILDNLNSHFNPNVSEPLQVPDSDDDEQDFIDVSDHLSPPSPDSDHSLPHSPHPNPLSPRLASTHPPCPVSEFLRGLGLSLKREWLDVCIYALQGSVPGFLSLNPAEKGKLCFEQFLVSDMNYAGAGVLPENVDSMHLVDLPGPYVLQVDEIVNISCALKGRYQTAPANIKRCLKLSMTDGVQRVFGMEYRPIKDLEVLAPAGLKVVICSVSVRRGLLMLVPEAFEVLGGLVEELEAARKRLVDEVNKPPRGRRTRTGVVPPLASRATRAAWPSDNVQEPGHPSRIVDTEPSRSDQGVRMFQRGNEAFTALVGDAFTTPVSRTNANSELSSNFVSNVEEIHSHSIPSGRASTEPTIVSNSVEDTNVVNSVDDTNTVNSVDDTNMVNSVEDAIMVDIEHPLILSGDREIPFTYLASLSAKLAAVKEKSPSVRGKIKCFLTGVKGFQFKQRATYELHVYVDDGSLISEVLIDHEVVQKAIGHSPKDVTGALDSSDVKVVSVMKETMRQFQIFLINFEGTMLVEMNRTSSLPVVLEMAEGCPESDARLLLRRLTCSNAVPTEEHTHIIDVINTASRGNEVNFFLEVSLAPVVRGVPKLVEIGLLVNIRGSRRAIGKILGNATNACTTSTIADKQHNDSGQLQCRTNVMALLFLLSNVS 1272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26821244 26829596 - Lsi06G016560.1 Lsi06g01656 666386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01656 1272 MobiDBLite consensus disorder prediction 630 680 - -
Lsi06g01656 1272 CDD SANT 284 321 IPR001005 -
Lsi06g01656 1272 MobiDBLite consensus disorder prediction 662 680 - -
Lsi06g01656 1272 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 683 1171 - -
Lsi06g01656 1272 SMART sant 280 328 IPR001005 -
Lsi06g01656 1272 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 1026 1167 IPR032199 GO:0000166
Lsi06g01656 1272 Pfam SWIRM domain 59 144 IPR007526 GO:0005515
Lsi06g01656 1272 SMART DUF1767_2 688 781 IPR033472 -
Lsi06g01656 1272 Gene3D - 62 148 IPR036388 -
Lsi06g01656 1272 SUPERFAMILY Homeodomain-like 281 328 IPR009057 -
Lsi06g01656 1272 Pfam SWIRM-associated region 1 503 571 IPR032451 -
Lsi06g01656 1272 ProSiteProfiles SANT domain profile. 284 330 IPR017884 -
Lsi06g01656 1272 MobiDBLite consensus disorder prediction 889 912 - -
Lsi06g01656 1272 SUPERFAMILY Homeodomain-like 54 148 IPR009057 -
Lsi06g01656 1272 ProSiteProfiles SWIRM domain profile. 56 153 IPR007526 GO:0005515
Lsi06g01656 1272 Gene3D - 280 329 - -
Lsi06g01656 1272 MobiDBLite consensus disorder prediction 341 355 - -
Lsi06g01656 1272 Pfam RecQ mediated genome instability protein 695 858 IPR013894 -
Lsi06g01656 1272 Pfam Myb-like DNA-binding domain 284 322 IPR001005 -
Lsi06g01656 1272 ProSiteProfiles Myb-like domain profile. 284 318 IPR001005 -
Lsi06g01656 1272 MobiDBLite consensus disorder prediction 341 397 - -
Lsi06g01656 1272 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 683 1171 - -
Lsi06g01656 1272 Gene3D - 737 862 IPR042470 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01656 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 K11649 csv:101222548 969.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02426 Lsi-Chr4:31359280 Lsi06g01656 Lsi-Chr6:26821244 1.65E-43 dispersed
Lsi06g01656 Lsi-Chr6:26821244 Lsi11g01094 Lsi-Chr11:19075248 6.51E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01656 Lsi_Chr06 FPKM 90.747856 95.286064 176.9991 163.358261 51.584167 65.688217 51.951351 366.24881 417.06601 355.584259