Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01657 ATGGCGTCTGCAAACATAGAAGACAAGAAAGCAGAGGATGAAGCTCCTGTCGAGGAGAAAAAGAAGCTCGAAGGAAAGGAAGAGAGTAAGGATGAAGATACTTCCCAAGGCCAGAAGCCAGGGAAAGAAGGGACTGAAGAAGCTGATAAAGAAGAAGCTACTAGCGTTGAGGGCGGTCCCGAAGAGGTAAATGGTGATGCTAAAGCTGAGGAGAGTAAGGAGGATGAGGAGCAGAAAGGTGACCCGGAAATTCAAGAAGTAGGTGAGGAACAGGGCACTGATGCAAATGACGAACCCGAGGAAGCAAATTCTGACAAAAAAGGGGAAGATAGCGCAGAGGAGGAAGATGGAGGTGACGACGAGGTTGATACTGAAGGCGAAGGCGAAGAGGAAGAAAGTGAGGTACCGAAGAAGGGATCAAAGGCAGATGCAAAGAAGGATAGAAATGTGTCTACTAAATCAAGAAAGAATTCTGCAGACAAGAAAGAGAAAAAAAAATCTATTTTGAAGGAGCCGGTCACGCCAACCACTGAGAGGCCAGCCAGGGAGAGAAAGACAGTTGAACGGTACTCCGTGCCATCGCCAGGCAGGCTGGGAAGGTCTTCTGCAAGCAAAGCTCTCTCAATTGAAAAGGGCCGCGGCACTACGCTCAAGGATATTCCAAATGTGGCTTTCAAATTGTCAAAGAGAAAAGCTGATGACAATCTGCAACTGCTTCATACAATTCTTTTTGGAAAGAAAGCAAAGGCTCAAACCTTGAAAAGGAATATAAGCCAGTTTTCGGGTTATGTTTGGGTTGAGAATGAGGAGGAGCTCTCAGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACTGATGTTTTGCTGGCTGACAAGGAGCAGAAACAAAAAACTCAGCCTACAAAGAAGAGAAAACATACATCGGATGTTGAGGAAGAAGGAGAGGATGATAAAGTTGAAACCTCAAACGAGAAGGATGGTTCTCATGATAAGGAAGATGACGACGACGATGCAACTGCCTCAAAAGAAGAAATCGATGAAAAAGATAAATCAGACGAGGATGATAAGACACCAGAGAAAATGCCTAGTCCAAAGAAGTCATCTAAGAAGGCTGGAAAAGATGATTCTAGGTCTAAATCTGTTGAAAAATCTTCTTCTGCAAAGAAAGCGGCTGTAAAATCTTCTAAGGAAGCTGCAAAATCAACAAAAAAATCATCCAGTTTGACTTCAAACAAGGATGCTGTCAAATCTGCTGCCTCACCATCAAAGCCAAAGGGCACGCCAAAAAAGCAAAAAGTTGAGGAAAAGAAGCCTGTAAAGGAAAAATCTTCGGGCAAGAAACAAACAAGCAAAGCCCCTGCAAAGGTTTTGGTGGAAGAACAAGGCAAGGGAAAAAGTAGCAAGAAAGTTAAGAAAGAACCCAGCAGAGAGGAGATGCATGAAGTTGTAGTGAATATTCTGAAGCAAGTTGATTTCAATACTGCAACTTTGTCTGACATTCTCAGGCAACTTGGTACCCACTTTGGTGTGGATTTAATGCATAGGAAAGCAGAGGTGAAGGATATTATCACAGATGTGATAAATAACATGAGTGATGAAGAAGAGGAAGCTGATGATGATGGTGGTGGTGATACGGACAAAGATGAGGACAAGGATGAGGATGCTTAA 1674 43.25 MASANIEDKKAEDEAPVEEKKKLEGKEESKDEDTSQGQKPGKEGTEEADKEEATSVEGGPEEVNGDAKAEESKEDEEQKGDPEIQEVGEEQGTDANDEPEEANSDKKGEDSAEEEDGGDDEVDTEGEGEEEESEVPKKGSKADAKKDRNVSTKSRKNSADKKEKKKSILKEPVTPTTERPARERKTVERYSVPSPGRLGRSSASKALSIEKGRGTTLKDIPNVAFKLSKRKADDNLQLLHTILFGKKAKAQTLKRNISQFSGYVWVENEEELSAKLLEFLESPHATTDVLLADKEQKQKTQPTKKRKHTSDVEEEGEDDKVETSNEKDGSHDKEDDDDDATASKEEIDEKDKSDEDDKTPEKMPSPKKSSKKAGKDDSRSKSVEKSSSAKKAAVKSSKEAAKSTKKSSSLTSNKDAVKSAASPSKPKGTPKKQKVEEKKPVKEKSSGKKQTSKAPAKVLVEEQGKGKSSKKVKKEPSREEMHEVVVNILKQVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVINNMSDEEEEADDDGGGDTDKDEDKDEDA 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26833724 26839067 + Lsi06G016570.1 Lsi06g01657 666387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01657 557 MobiDBLite consensus disorder prediction 290 314 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 429 450 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 345 402 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 463 480 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 322 338 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 1 210 - -
Lsi06g01657 557 PANTHER DEK PROTEIN 98 270 IPR044198 GO:0003677|GO:0006325
Lsi06g01657 557 PANTHER DEK PROTEIN 270 553 IPR044198 GO:0003677|GO:0006325
Lsi06g01657 557 SUPERFAMILY DEK C-terminal domain 469 530 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 290 480 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 530 557 - -
Lsi06g01657 557 PANTHER OS01G0924900 PROTEIN 98 270 - -
Lsi06g01657 557 PANTHER OS01G0924900 PROTEIN 270 553 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 131 190 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 1 86 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 403 419 - -
Lsi06g01657 557 MobiDBLite consensus disorder prediction 112 130 - -
Lsi06g01657 557 Gene3D - 468 531 - -
Lsi06g01657 557 Pfam DEK C terminal domain 476 528 IPR014876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01657 K17046 DEK; protein DEK - csv:101211154 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00493 Lsi-Chr5:6229566 Lsi06g01657 Lsi-Chr6:26833724 3.25E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01657 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0