Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01658 ATGTACATGGTTGAAGGGGGAATTTATCTTATGCTCTTAAACCCCGATGTCATGACTCAGAAAACCTTGCTTGTCCATAGCTATCCCCTTGCTGTGCATCTCACCAACCCCGAAAGGAAACTCATAGTGGACTGTACGGCGGAGGGTGCTGTCTTTGACTCTCTGTGGAGGCTGAAGCAGACTGCTGCATTGATTGGAACATATTGGAGATATTACGAAGTGACTAAGTTTAACGGCGAGTTCATGGTGGTTGGGCTATGCGTGAGCCACAGTGCTGTTGATGGGGTTGGGGCTATGGATGAGTTTGTGAATTCGTGGGGTGAAACTGCAAGGAGCTTGCCTTTTTTACCAGATAGGACCATTTTCAAAGCTCGAGACCTTCCCCTGATTGAGTTGCAGCACCATGAATTTACTGAGATAGTAGTTATGTCGTCAAACACTTGCAAGCTTCATGGAGAGGAGATGCTTTACAGGCCCTTCTGTTTGGAGCCAGAGAAACCGAACGAACTCAAAATGAAAGCCTTGAAAGATGGGGTTTTGAAGGAGCTCCACCAGTACAAATGCATCCTAATCAAAATGCAAAGCCTCCTAATTGCTGAATATTCACTTTTGGGTCAGATGGCTGGCTGTGGCAAAAGGGGTTTTCAGCTCGACGTTGAGCAGCATGAACCCACTCTGATTACTCCCGCAGAGGAAACGCCAAAGGGTCTCTACTTCCTCTCAAACCTTGACCAGAACATTGCAGTAATCGTCCGTACAATTTACTCCTTCAAATCAGAGTCCAGAGGCAATGAAGATGCAGCCCAAGTCATTAAAGATGCTCTTTCCAAAGTGCTTGTTCATTACTATCCCCTTGCTGGGCGGCTTACTCTCAGTTCCGACAAGAAGCTCATTGTGGACTGTACGGCGGAGGGTGCTGTCTTTGTGGAGGCTGAAGCTGACTGTTCCATTGAAGACATTGGAGATATAACCAAGCCTGATCCTGACACTCTTGGCAAGCTCGTCTATGACATTCCTGGCGCTACCAACATACTTCAGATGCCTCCTCTTGTAGCCCAGGTGACTAAGTTCAAATGTGGTGGATTCGTTGTGGGGTTGTGTATGAATCATTGTATGTTTGATGGGATTGGAGCAATGGAATTTGTGAATTCGTGGGGTGAAACGGCAAGGGGTTTGCCTTTGGCTGTCCCGCCGTTTCTAGATAGAAGTATTCTGAAAGCACGAGAGCCGCCGGTGATTGAGTTTCCTCACCGGGAATTCGCTGAGATAGAAGATGTATCCAACACTTGCAAGCTTTATGGAGATGAGGAGATGCATTATCGGTCCTTCTGCTTTGAACCGGAGAAGCTGAATAAGCTCAAACAGAAAGCGTTGGAAGATGGGGCTTTGAAGAAATGCACGACGTTTGAAGCTCTATCGGGATTTGTATGGAGGGCAAGAACAGAGGCTCTACGAATGCAACCCGATCAACAAACAAAGCTTCTCTTCGCCGTCGATGGACGATCTAGGTTTCAGCCCCCAATACCAAAAGGGTACTTTGGAAACGCCATCGTTTTAACCAACGCGTTATGCAGCGCCAGCGAGCTTCTGGAAAATCCACTGTCGTATGGGGTGGGGCTGGTTCAGAAGGCAGTGGAGATGATCACAGACAGCTACATGAGATCGGCCATCGATTTCTTCGAAGCGACGAGATTAAGGCCTTCTCTGGCAGCGACTCTATTGATCACAACTTGGTCGAGGCTAGGGTTCCACACGACGGACTTCGGGTGGGGGGAGCCGGTGTTTTCAGGGCCGGTGGCGTTGCCGGAAAAGGAGTTCAACGTCACCGTCACCGTTACCGTCGTTCCCGTCCGCCGAAACCTCTGTTCAAAACTGATACATCCGTATCTGAGAGCGAAGGCATCGGCCTTTTGTCTTACTCTGCACGCACCCATGGAAGCTAGTGTCAAGCAGGAACTTATTGAACCTTTACGCGCGCAAGGAACGGGCAACAATCACGAGGCATCAAATGTGTCTCACTCGTTTATTGATCTCTGTAGTGACAGCGAGTCGGATTCGGAAGATTCGGAAGATTCGGAGCAGGAAGTAGTTGACGGAATTTTGGGAGGAGATACGCGAAGCATCGGACTCCCAAACGGCGTCGATGGAGGGTTATCGAAGAAGAGGAGGCTGAACGAGTTGGAAGTTTTTAAACCTCTAGGTTTTCTTCCGCCCGCGGCGCTGGACGAAAAGCATTCTATGGCGGTTATTTTGCCCTCGTCAGCAGAGGCGGGCACTGGACAAGAGATGAGGACTTCGAATGCAAATGGTTCAGCCTGCAAACAGTTTTGGAAGGCAGGAGATTATGAAGGAGCTCCTTGCAGTAACTGGGACTCATCATCGGGTGGCATGGACCACGTTAGGGTTCACCCTAAGTTTTTGCATTCTAATGCGACCAGTCATAAGTGGGCTCTTGGAGATAATGGTGGTGGGATGAGCCCCGACAAAATGCGTCACTGCATGTCATTGGATGGTAATGGTTTTAAGACTAGTACCATGAGACTTGGAGCAGATCATATCTTCTACAATTTACTGATCGAACTCTCTGGGCAGTGGCACACAGAGCATTGGATTACTATCCTATACATTTTTGAGAAGCACTGGAAAGCAAGATATCGTAGTTCCAATGGTGAGGACATTAACATGAAGGGAGGTGAATGGGCCAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAGTGGTCTCCGTTTTCTAATGAAGCTGAACTTCTCCGTCAGTTTAACTTGATGAAAGATCATGGAACTCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGACAGTTGGAGCTGGATTTTGATACTGACCAACATGACATCCAAATCAGAGGTGTCAACAGAGATGAGAAAAGTATACAAATGGCTAAAAAATTTCCCAACTCTCGGCACTTCTTGACTTATCGGCATTCTTTGAGGCTTGACTATGAAAGGAAGGGAGGTGAATGGGCCAAGATAGTGCGATCTTCTCTTAGTGATTGGAACAAAAATGTGGAAACAATCGTTCAGTGGTCTCCGTTTTCTAATGAAGCTGAACTTCTCCGTCAGTTTAACTTGATGAAAGATCATGGAACTCGCATTATAATATATAACCTCTGGGAAGACGACCAGGGACAGTTGGAGCTGGATTTTGATACTGACCAACATGACATCCAAATCAGAGGTGTCAACAGAGATGAGAAAAGTATACAAATGGCTAAAAAATTTCCCAACTCTCGGCACTTCTTGACTTATCGGCATTCTTTGAGGAGTTATGCTTCGATTCTTTATTTGAGGCTCCCTCCTGGCTTTCGCATCATTCTTCGTGGGAGAGATGTAGAACACCATAACATTGTGAATGATATGATGATGTCTCAAGAGGTCACGTACAGACCTCAGCCAGGTGCTGAGGGGGTTGGCAAAGATACAAATATGGTTGCCGTTGTGACCATTGGGTTTGTGAAGGATGCAAAGCATCATATAGATGTTCAAGGATTCAATGTTTATCATAAGAATCGTCTCATCAAGCCATTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCGAATTTTGTTGAACCTGCCCACGATAAGCAGGGGTTTGAGCGAACAACTGTTCTTGCAAGACTTGAATCACGGGGTTCCTACTGTCATAAGATTGGCTATGCTCCAAGACGAATCAATAAACCCACCAATCGGTCTCCAGATAGAGAAAGTTCCCCGGATGATTATTCTTCACAGCCTTCACCTCAATCAAAAAAGAAGTATACTACATTAAGTGGGAAGAAACCTGATAAAGTCTATTCAGGAAAAGAAACAGAAAAGTTTCAGAAAACAAAGGACTTTAGATATGGGAATGTGCATTCAAGTAAAGACAAAAACAGCAGTATGAGCCCTGACCCTGAGAAATCGAGGATAGGACCATGTTTTTCTGAGCCACCTTCACCTTCTGGACTGGAAGTTAGGGTTGATAATCTGCCTGGAGGACAAGCAAACGGTACTGGCAATGAGACATTTCATGGAAATGATGTTTCAATGACAATGAAGGCGTCTTCAAATGGAGGTGGAGGAGATGTACACGATAATGAGCATTCCCTTTCAAGTTCCGATTTTCACATGCTACAGCAGTTGAAGGAAGAAAATGAAGAATTGAAGGAGAGATTACAGACAAAGGAAGCTGATCAAGACAAATTGCAGCATGAAAGAGAGAGGTGTAAATCACTTGAGGCTCAGCTTAGAGCAGCGGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCTGAAGAGAGAGATCGAAGAGAAACTGAGGAGCGAAATTTGCGAAAAAAGCTTCAGGTGAGGCATGATGTATCTCTTGACCATTATAAAGACCACGTTGGTATTCGCTCAAGCAGCCATTGGGTGGACAAAGAGGAACCTTCCGAATTTATAGGCGTGCCATTTGCTCCAGATTCATCCTCTTTTGGACAATTTGGAGGCTACTAA 4593 45.7 MYMVEGGIYLMLLNPDVMTQKTLLVHSYPLAVHLTNPERKLIVDCTAEGAVFDSLWRLKQTAALIGTYWRYYEVTKFNGEFMVVGLCVSHSAVDGVGAMDEFVNSWGETARSLPFLPDRTIFKARDLPLIELQHHEFTEIVVMSSNTCKLHGEEMLYRPFCLEPEKPNELKMKALKDGVLKELHQYKCILIKMQSLLIAEYSLLGQMAGCGKRGFQLDVEQHEPTLITPAEETPKGLYFLSNLDQNIAVIVRTIYSFKSESRGNEDAAQVIKDALSKVLVHYYPLAGRLTLSSDKKLIVDCTAEGAVFVEAEADCSIEDIGDITKPDPDTLGKLVYDIPGATNILQMPPLVAQVTKFKCGGFVVGLCMNHCMFDGIGAMEFVNSWGETARGLPLAVPPFLDRSILKAREPPVIEFPHREFAEIEDVSNTCKLYGDEEMHYRSFCFEPEKLNKLKQKALEDGALKKCTTFEALSGFVWRARTEALRMQPDQQTKLLFAVDGRSRFQPPIPKGYFGNAIVLTNALCSASELLENPLSYGVGLVQKAVEMITDSYMRSAIDFFEATRLRPSLAATLLITTWSRLGFHTTDFGWGEPVFSGPVALPEKEFNVTVTVTVVPVRRNLCSKLIHPYLRAKASAFCLTLHAPMEASVKQELIEPLRAQGTGNNHEASNVSHSFIDLCSDSESDSEDSEDSEQEVVDGILGGDTRSIGLPNGVDGGLSKKRRLNELEVFKPLGFLPPAALDEKHSMAVILPSSAEAGTGQEMRTSNANGSACKQFWKAGDYEGAPCSNWDSSSGGMDHVRVHPKFLHSNATSHKWALGDNGGGMSPDKMRHCMSLDGNGFKTSTMRLGADHIFYNLLIELSGQWHTEHWITILYIFEKHWKARYRSSNGEDINMKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNEAELLRQFNLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRLDYERKGGEWAKIVRSSLSDWNKNVETIVQWSPFSNEAELLRQFNLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKSIQMAKKFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPGAEGVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLESRGSYCHKIGYAPRRINKPTNRSPDRESSPDDYSSQPSPQSKKKYTTLSGKKPDKVYSGKETEKFQKTKDFRYGNVHSSKDKNSSMSPDPEKSRIGPCFSEPPSPSGLEVRVDNLPGGQANGTGNETFHGNDVSMTMKASSNGGGGDVHDNEHSLSSSDFHMLQQLKEENEELKERLQTKEADQDKLQHERERCKSLEAQLRAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQVRHDVSLDHYKDHVGIRSSSHWVDKEEPSEFIGVPFAPDSSSFGQFGGY 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26839428 26876535 + Lsi06G016580.1 Lsi06g01658 666388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01658 1530 Gene3D - 214 422 IPR023213 -
Lsi06g01658 1530 Gene3D - 55 139 IPR023213 -
Lsi06g01658 1530 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 820 1000 IPR045261 GO:0016887
Lsi06g01658 1530 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 645 819 IPR045261 GO:0016887
Lsi06g01658 1530 MobiDBLite consensus disorder prediction 1358 1381 - -
Lsi06g01658 1530 Gene3D - 430 621 IPR023213 -
Lsi06g01658 1530 MobiDBLite consensus disorder prediction 1270 1286 - -
Lsi06g01658 1530 Pfam Morc6 ribosomal protein S5 domain 2-like 1107 1242 IPR041006 -
Lsi06g01658 1530 PANTHER PROTEIN MICRORCHIDIA 7 1001 1487 - -
Lsi06g01658 1530 MobiDBLite consensus disorder prediction 1250 1429 - -
Lsi06g01658 1530 PANTHER PROTEIN MICRORCHIDIA 7 645 819 - -
Lsi06g01658 1530 MobiDBLite consensus disorder prediction 1287 1317 - -
Lsi06g01658 1530 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1001 1487 IPR045261 GO:0016887
Lsi06g01658 1530 MobiDBLite consensus disorder prediction 1404 1429 - -
Lsi06g01658 1530 Pfam Transferase family 73 172 - -
Lsi06g01658 1530 Pfam Transferase family 218 605 - -
Lsi06g01658 1530 PANTHER PROTEIN MICRORCHIDIA 7 820 1000 - -
Lsi06g01658 1530 Coils Coil 1400 1468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01658 K15400 HHT1; omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] - csv:101222073 817.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02660 Lsi-Chr2:33043556 Lsi06g01658 Lsi-Chr6:26839428 2.99E-78 dispersed
Lsi02g02661 Lsi-Chr2:33069688 Lsi06g01658 Lsi-Chr6:26839428 1.67E-74 dispersed
Lsi04g01699 Lsi-Chr4:24372809 Lsi06g01658 Lsi-Chr6:26839428 7.47E-59 dispersed
Lsi06g01658 Lsi-Chr6:26839428 Lsi07g00008 Lsi-Chr7:118353 5.05E-41 dispersed
Lsi07g00231 Lsi-Chr7:2562997 Lsi06g01658 Lsi-Chr6:26839428 1.58E-40 dispersed
Lsi07g00766 Lsi-Chr7:8337555 Lsi06g01658 Lsi-Chr6:26839428 1.63E-27 dispersed
Lsi08g01373 Lsi-Chr8:22029349 Lsi06g01658 Lsi-Chr6:26839428 4.53E-63 dispersed
Lsi11g00929 Lsi-Chr11:13318426 Lsi06g01658 Lsi-Chr6:26839428 3.16E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004260 2 1 1 1 2 0 2 1 1 1 0 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01658 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0