Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01668 ATGATAGACTTCGCTCGCGTGCAAAAGGAGCTCCAAGAATGCACTAAAGACATTGAGGCTTCTGGTATTAGAGTCACCCCCAAAGCCGATAGTCTTTCCCATTTGCTCGGCATCATTCCTGGTCCTATCGATACTCCTTACGAAGGTGGCACCTTCGAAATTGACATCAGATTGCCAGATGGGTATCCATTTGAGCCCCCCAAAATGCAGTTTACTACAAAAGTCTGGCACCCTAATATCAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCATATACGCTGAAGACAGCCCTGCTTTCTGTGCAGGCATTGCTATCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTCGTGGCACAACAGTATCTAAGGGACTACCTGACTTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGGGTGGAAGAAAAGGTTCAGAAACTTGTGGAGATGGGATTCCCGGAGGCTCAAGTTCGTCGTCGGGTGCTGCAAATGGCGACCCCCAAACAGCACATTGAAGCTATCAGGAGAAACAAGTTTTCGATTGGAGGTCCGCCCAACCCCTTAACCCAGGATTTTCATCATGCTGTCGGTAACCTTTCTGCGGAGCTTTACGCCAAGGACGTTCACTTTCTCATGGAGCTTATTCAGACGTCACCCAAACTGGAGCTTCTATTCAACAACGAGACTGGCTTTTCTTCTAATAACATCGACTCCATTTGTAGCGTTGGCCGATCCACCAAATCCAACAAGAGGAAACGGGGTTATATTTGGGAGAAAGGCATTGGATTCAAAAGTGTTTTTCTAATTACTTCTCAGCCTTACATATTCAGCAATGGATATCAGATACGTTTCAATGAACAGCCTTGCCAACATTGTGGTGTTGGCTACGTTGTTCCTGAGTGGGTTGAAGAGGATCCAGTTCTTTCCAACATTAAGAAAATCTATGGTCACCATTCTAAACTCCCAACAACAACCATTGTTTTGCCCTTGAAGCCTGACAAGATCAAATCTGTCAAGCAGCAGCTTTCAAGCATTCACCCCGAAATCCTATTGTTTCTTTCAAAAATTAAGCAGCTTTCTTATAAGGAAGCTAATGAGGATCCCAAGTCCAACGCTGAAACTGCAATTGCTATTTTCAGTGAAACAAACTTCCTTATGAGGAAGAACATTGACGCCGAGTCCTACACCCTCCATCTCTCTTCCTTGGAAAATGATAGTGGAGTTGATAGCCAATGCTCCTATTACATGTGGAAGCAGAAGTTTCCAGTCAAGGAGGAAAACAGAGTGAAAGAGAGGATGGGAGTGGAGGAATTGGTAATCACATTGGCATTTCCAAATGGGGAGCGTCTTAGTCGAGGAGTAAAGTTACCTGGGGTCTATGCCTACCTTCCCACCGAGATGGTAACCAACTTTCCCTTTATAATTCAGGCAGATTTTGTTTTATCATCATCCAGGGAAACCATCCTCCTTGATAACAAATGGAATCAAGGGATTCTTGACTGTGTTCCCTCTACTTTTGTCAATGCTTTTGTCTCATTGGTCAGGACTACGGATGAAGCTCCCTTGCCTTCTTTGGCCCATTTGTTCAACTTCTTGCCCATCATTTCCTCATCCTATGACAAGTTGAATGTTGTGAGGGATTTAATCAAAGAAAAGTTGCTTGAAGAACATATCCTTCCTGGTCATTCATTCTTGAAGAAACAGAGGTTCTTCCACAAACCTTGTGAGGTGGGTAGAATTATGCCGGCCTTCTGGAATATATTAATGAAGGCACATGAGCGAGGGTTAAGTTTGCTTAATCTATCGTCCCATGGGAAGTACATTTTAAGTTCGTCATTCGATACACAGAAATATAATCAGGTTTTGAGTTTTCTTGACGTGAAACTAGTTGATGATGAATGGTATGCAAAGTGCCTACTGGGTACTAACATTGTGGAGGGTGTGTCTGATGACGTTTATGTCGAGCTTCTACAATATGTTGCAGATAAATGGAGTTCAAGATTTCATGGTACAAACATGAAGAACGTACCACTTATAAGATATGTTGATCTTGATGGGAATGTTTCTCTGCTTAGTGTAAATCAATTCACTCAGTCTTGTGGCAGAAAGGTGCACCTTGCTTATCCTGAACGTCTACCATGGCTTAATAAATCGAACATAGAATTCAAATTTGTTGCCAGGTGTTTTTTTATGCCAGAAAGCACGCAGAAGTGCATTGGGTCTTGTCCTAGGAAAGATATGTTGTTGCAGTGGCTTCGAGAGCATGTGAATGTTGATACCATCAGCGTCTTTCAATTTGCAAAACTCCTTGCAAATTCTCTTGGCAACAATCCAAAGCACATAATTATGTATGTTCATTTCCTATACCACTCATTATCGAAAAACTATCTGAAAAATGTGGACATCAAGTCTCTGTGCAGTGTTATGCCAGTGGTAGACAAATATGGCGCTGTCATCAAACACAATCAAAAGCTTCTCATCCCAGCGGATGGTAGTAAATGGGCAGAATTGTTTGATTCAAATCCCTGGGAAAATGATGGCTTCGTTGAGTTGGGAGGAGATTACATTAGCCCGGTTTATTTTGCTGGTGAATCTATAACTAGAGAGCAGCTCACAGATTTTCTCAGAACACATATCGGTGCTTTTGACATCCCTGAAATATCTCCTCCCAACACAGAAGTTTCTGTTGTTTCTTCACCACTTACTGTGCAAAATGTGATTTTGCTATTAGATTGGCTCCATAGCTTGAAAACTAGAAGGCTTTCTATCCCCTGCAAGTTTTTGAAATGCATAAAGGAAGGTTGCTGGCTAAGAGTTACTGTGAATGGATCTCCTGGTTATAGACCACCCTCGGAGTCTTTTGACCTCTCCTCGTTGTGTACAAGTATTTTGGAAAATGGGTCAATTCTGGTGGACATCCCACTGATTGATCACAAATTCTACGCTGATGGGTTGAAGGGCTATGAGGAGGAGCTGAAAACTATTGGTGTCATGTTTGGAAACAGTGAAGTTCTAGACTTTATCGGGAATCAGCTCACGTCAGCTGCGACTGTATTAGGTTTGAAAAGAGAAAATGTCTTCAACATATTACAATTCATCCGGTTTTTGAAAAAACGGTATTGTGGTGATAACTTTATTGCTAGCATGAGAAAAGGGACATGGCTTAAGACACGTCATGGTTATACCTATCCAGTTGGATCGGTGTTGTACAGTAAGGAGTGGGAGGCAGCTTCGGTTCTTAGCAACATCCCTTTTATTGACGAGGATTACTATGGTGATGAGATACGTTCATTCCGGGAGGAACTTAAGTCTCTTGGTGTGGTTGTTAACTTTCTGGGAGTTTCCCAACTAATTGTGGATCATTTGAAGTCACCTTCTCAATTAACTTGTCTGAGAACTGATGCTTTTCTGTTGATTCTTAAATGTTTAACGGAACGGGGACCAAAACTAGCTGATTTTCTTGTTAATTCATTCAAAAGTGTGAAATGCGTCAAGACTAATCTAGGGTACAGACCTCCTGGTGAATGTTACTTATCAGACCTTTCTTGGGCTTCCATTCTGCAGGTTTTTACCGATTTCCCTCTAGTTGATTGTAAGTTCTATGGCAGCCAGATCTTTTCTTACAAGTGGGAATTAAAAAAAATGGGAGTGGTGGTCGATTTTGAGGAAGCAGTCAAAGCATTTTCTAAAAAACTCAGGGAACATGTGGTTACAAGTACTCTAACAAAGGAAAGTGCGATATTGTTTCTATCAAGCTTCAAACAGTTAAAAGCGAGAATAGAATTTCCTTCGGGTTTTGAGAAGTTCATTTGTGAGTTGAAGTGGTTGCGGACTCGACTTGGTGATCATAGATCTCCTAAAAATTGCATATTGTATGATCCAAGTTGGGAATCTGTGTCTGCAATTGCTCTCCTCCCATTTATAGATCATAGTACAATCTACTACGGAAATCACATTCATGAATACGAAGACGAGTTGAAGAATATGGGAGCTATTACTGACTTTAAAGATGGTGCTCATATGGTTGCTGCTGGGCTTTGTCTTCCACAAAATCCTTTTGTCATTACTTCTGAAAATGTGCTTTCACTTTTAGGCTGCATTCGGATTTTGATGGAGGAGAAATATTCCTTTTCAGATGATTTCTATAGAAAGGTCTCGCAGAGATGGTTGAAGACTTCTTTTGGATACAGGTCTCCGGAAGAAAGTTTGCTCTTCACTCCTAAGTGGAGTTCTTATCTGAAGCCTACTGATGGGCCTTTCATTGACGAAGAGTTTTACACATTTGACATCAAGTTATATGAAAAGGAGCTCGAAGAAATAGGGGTGATAGTTGATTTGGACCATGGATGTCAACTAGTGTCAAGTTTTCTAGACTTTCATGGCGAGTCTTCCACTATCATACGAATGTATACTTATTTGAGTGCATTCAATTGGGAGCCAGACACTGAAGTTGCCAAAAGGATTTGGGTAGCTGATGGAAATAATAATGGACAGTGGATCAACCCAGAAGAATGTGTACTTTCTGACAAGAAAGACCTTTTTGGTTTGGAGTTGACAGTTCTAGAGAGGTACTATAAACAGGATTTACTTTTACTCAATTTCTTTTCTAAAGTCTTTAAAGTAAGAAACAGCCCTTCAATCGATGATTACTGCAAACTCTGGAGAGGTTGGGAAAGTAATCAAGATGGACTCTCTCATGACAAGTGCTTTAAGTTTTGGAAATATGTTACAAAGCACTGTAATTCAAAAAATGAGCAAATTTTCGCTGATGCCATTACAAAAGTGCCTACAATGTCTGGCTCGGATGGAGTTGTTTTGTTTGATAAGCGTGACATTTTTATTGCCGATGATCATCAATTGAAGAATTTATTTGAACGAATGTCTCCGCATCCAATTTTTGTATGGTATCCTCAGCCAAGTTCGCTTTCCTTGCCTCTGACAAGGTTGTTGGAAGTTTATAAGAACGTCGGGGTGCGGAATATCTCTGAGTCTGTTGAGAGAGTTGAGAGTGCCATAGTTGGTGGAGTCGGGATGACACATTTGAATCCGAATGACATTTCAATTGGAAGAGGTCTGGTGCGTCTCATTCTTGGTTTTCTAGCAGACCCTTCTAAGAAGATTGAAGCAGAAAAGAGGCATGAAATTGTTGGATGCCTCCTCAATCTTACTGTTGTTGAGACTGGAGAACCTGTCATGATACACTATAGTTTATCACTAACTTCAGGGGAGGTCATCAATGCTAATGCAACCCGGTTGATACGTTGGGAAAGGGGGAATTCAAAGTTGTTCACTCAGAAAAGGGTAATGTCAGGTGGTCATAAGGAGATGAGTATGCTACCTACTTTTCTGAGGTTGGCCTTTTTGTTGAATTTCGATGACCAAGCTGTTAGTTTCATCATGGATTCCAAAAATCTTCAAATCTTCAAGGAGGATGAGGACTTCCTCTCTTCTGCCTTCACTGATCAAGCCAAGTATGTTTAA 5529 41.38 MIDFARVQKELQECTKDIEASGIRVTPKADSLSHLLGIIPGPIDTPYEGGTFEIDIRLPDGYPFEPPKMQFTTKVWHPNISSQSGAICLDILKDQWSPAYTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYLTFAGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEAQVRRRVLQMATPKQHIEAIRRNKFSIGGPPNPLTQDFHHAVGNLSAELYAKDVHFLMELIQTSPKLELLFNNETGFSSNNIDSICSVGRSTKSNKRKRGYIWEKGIGFKSVFLITSQPYIFSNGYQIRFNEQPCQHCGVGYVVPEWVEEDPVLSNIKKIYGHHSKLPTTTIVLPLKPDKIKSVKQQLSSIHPEILLFLSKIKQLSYKEANEDPKSNAETAIAIFSETNFLMRKNIDAESYTLHLSSLENDSGVDSQCSYYMWKQKFPVKEENRVKERMGVEELVITLAFPNGERLSRGVKLPGVYAYLPTEMVTNFPFIIQADFVLSSSRETILLDNKWNQGILDCVPSTFVNAFVSLVRTTDEAPLPSLAHLFNFLPIISSSYDKLNVVRDLIKEKLLEEHILPGHSFLKKQRFFHKPCEVGRIMPAFWNILMKAHERGLSLLNLSSHGKYILSSSFDTQKYNQVLSFLDVKLVDDEWYAKCLLGTNIVEGVSDDVYVELLQYVADKWSSRFHGTNMKNVPLIRYVDLDGNVSLLSVNQFTQSCGRKVHLAYPERLPWLNKSNIEFKFVARCFFMPESTQKCIGSCPRKDMLLQWLREHVNVDTISVFQFAKLLANSLGNNPKHIIMYVHFLYHSLSKNYLKNVDIKSLCSVMPVVDKYGAVIKHNQKLLIPADGSKWAELFDSNPWENDGFVELGGDYISPVYFAGESITREQLTDFLRTHIGAFDIPEISPPNTEVSVVSSPLTVQNVILLLDWLHSLKTRRLSIPCKFLKCIKEGCWLRVTVNGSPGYRPPSESFDLSSLCTSILENGSILVDIPLIDHKFYADGLKGYEEELKTIGVMFGNSEVLDFIGNQLTSAATVLGLKRENVFNILQFIRFLKKRYCGDNFIASMRKGTWLKTRHGYTYPVGSVLYSKEWEAASVLSNIPFIDEDYYGDEIRSFREELKSLGVVVNFLGVSQLIVDHLKSPSQLTCLRTDAFLLILKCLTERGPKLADFLVNSFKSVKCVKTNLGYRPPGECYLSDLSWASILQVFTDFPLVDCKFYGSQIFSYKWELKKMGVVVDFEEAVKAFSKKLREHVVTSTLTKESAILFLSSFKQLKARIEFPSGFEKFICELKWLRTRLGDHRSPKNCILYDPSWESVSAIALLPFIDHSTIYYGNHIHEYEDELKNMGAITDFKDGAHMVAAGLCLPQNPFVITSENVLSLLGCIRILMEEKYSFSDDFYRKVSQRWLKTSFGYRSPEESLLFTPKWSSYLKPTDGPFIDEEFYTFDIKLYEKELEEIGVIVDLDHGCQLVSSFLDFHGESSTIIRMYTYLSAFNWEPDTEVAKRIWVADGNNNGQWINPEECVLSDKKDLFGLELTVLERYYKQDLLLLNFFSKVFKVRNSPSIDDYCKLWRGWESNQDGLSHDKCFKFWKYVTKHCNSKNEQIFADAITKVPTMSGSDGVVLFDKRDIFIADDHQLKNLFERMSPHPIFVWYPQPSSLSLPLTRLLEVYKNVGVRNISESVERVESAIVGGVGMTHLNPNDISIGRGLVRLILGFLADPSKKIEAEKRHEIVGCLLNLTVVETGEPVMIHYSLSLTSGEVINANATRLIRWERGNSKLFTQKRVMSGGHKEMSMLPTFLRLAFLLNFDDQAVSFIMDSKNLQIFKEDEDFLSSAFTDQAKYV 1842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26926387 26937552 - Lsi06G016680.1 Lsi06g01668 666398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01668 1842 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 211 371 IPR036890 -
Lsi06g01668 1842 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Lsi06g01668 1842 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Lsi06g01668 1842 CDD UBCc 6 145 IPR000608 -
Lsi06g01668 1842 SMART ubc_7 5 150 - -
Lsi06g01668 1842 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Lsi06g01668 1842 PANTHER WU:FJ29H11 184 1835 - -
Lsi06g01668 1842 SUPERFAMILY UBC-like 5 151 IPR016135 -
Lsi06g01668 1842 PANTHER ATP/DNA BINDING PROTEIN-RELATED 184 1835 - -
Lsi06g01668 1842 Gene3D Ubiquitin Conjugating Enzyme 2 152 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01668 - - - mcha:111007222 2478.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01668 Lsi-Chr6:26926387 Lsi09g00193 Lsi-Chr9:2006813 5.27E-37 dispersed
Lsi06g01667 Lsi-Chr6:26917365 Lsi06g01668 Lsi-Chr6:26926387 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003517 0 3 0 0 0 2 1 4 2 1 2 2 1 1 2 1 2 1 1 2 1 1 1 2 2 2 2 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01668 Lsi_Chr06 FPKM 0.0 0.0 0.051678 0.0 0.0 0.0 0.0 0.0 0.037267 0.0