Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01672 ATGAATAATTCCCAAATGCTGGCCTGTGATCTTGACTCCCTTGTGCTCTCAAAAATGAATAATGCAGCATGTAGTTGGGAATTAGAAGAAACCCCAGAAACCCCTCACTATCACTATCACTATCACCACCTTCTTCCACCTCAAATCCAATCTCTTTATACTAATAATATTACTACCACTGACTCCCCAAACCCAAACGCAAACGCTTCCTCAAATTACCAAACTCCTCATCACATATCTATGCATTCTTCCGAGGACCCAAGTGGAAGTGGGAGCGACCGCAAGAGGAGATGCCACAAGCGCGCAAAAGCAGGAGGAGGATCGGGCTGCAACAAGCTCAAAACTCATCCCTCTGCTGATCATGGCGGCTACATCCATGTCAGAGCAAGGAGGGGACAGGCCACCGACAGTCACAGCCTTGCAGAGAGGGTCAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTTTGCAAACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTAATGCTCGACGAAATTATTAACTATGTTCAGTCCCTGCAAAATCAAATTGAGTTCCTGTCCATGAAGCTTGCTTCTGTTAACCCCATCCTCTACGACGTTGGCATGGATAATCCAGAAATATTATTGAATGGGAATGGCATGGTGTCACACTCAGAGCAGGCAGAATTGGCCTATAATATGGCACCATACAACACATTTCAGGCCACAGGCGGCGGCGGTGGCAGGCCGATCTTAACGCCCGGAAACATGAGCTTTATCAATCCATCTCCACTTTTCTTGGACCATGGGAATACTTCTCTGCTACATCTGTCATGA 828 47.22 MNNSQMLACDLDSLVLSKMNNAACSWELEETPETPHYHYHYHHLLPPQIQSLYTNNITTTDSPNPNANASSNYQTPHHISMHSSEDPSGSGSDRKRRCHKRAKAGGGSGCNKLKTHPSADHGGYIHVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQNQIEFLSMKLASVNPILYDVGMDNPEILLNGNGMVSHSEQAELAYNMAPYNTFQATGGGGGRPILTPGNMSFINPSPLFLDHGNTSLLHLS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26959007 26961121 - Lsi06G016720.1 Lsi06g01672 666402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01672 275 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Lsi06g01672 275 Gene3D - 130 201 IPR036638 GO:0046983
Lsi06g01672 275 MobiDBLite consensus disorder prediction 55 121 - -
Lsi06g01672 275 PANTHER BHLH-TRANSCRIPTION FACTOR 72 231 - -
Lsi06g01672 275 SMART finulus 139 189 IPR011598 GO:0046983
Lsi06g01672 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 183 IPR011598 GO:0046983
Lsi06g01672 275 MobiDBLite consensus disorder prediction 55 87 - -
Lsi06g01672 275 CDD bHLH_AtBPE_like 123 203 - -
Lsi06g01672 275 Coils Coil 173 193 - -
Lsi06g01672 275 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 231 IPR024097 GO:0006355
Lsi06g01672 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 199 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01672 - - K18878 csv:101208544 323.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00525 Lsi06g01672 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01672 Lsi-Chr6:26959007 Lsi09g00778 Lsi-Chr9:8827021 2.22E-39 dispersed
Lsi05g00376 Lsi-Chr5:4738511 Lsi06g01672 Lsi-Chr6:26959007 8.67E-34 transposed
Lsi02g00525 Lsi-Chr2:4541496 Lsi06g01672 Lsi-Chr6:26959007 6.60E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g37 . . . . . Bpe13g00187 . . Cmo13g00858 Cmo18g00237 Cma10g00029 . Car10g00020 . . Cpe20g00290 . Bhi02g00636 . . . . . . Cla06g01775 Cam06g1968 Cec06g2019 Cco06g2026 Clacu06g1926 Cmu06g1866 Cre06g2679 . . . . Lsi02g00525 Csa01g00988 . Cme12g01565 . . Bda11g01582 . . . Bma03g01225 . Sed08g2410 Cmo10g00026 . Cma13g00828 Cma18g00297 Car13g00670 Car18g00247 Cpe09g00944 Cpe18g00931 Bhi08g01535 Tan05g3008 Cmetu02g1873 Lac10g0610 Hepe07g2084 . . Cla03g00376 Cam03g0396 Cec03g0382 Cco03g0397 Clacu03g0395 Cmu03g1000 Cre03g0692 Lsi06g01672 Csa01g00019 Chy02g02693 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014432 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 0 0 0 21
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25564 PF00010 HLH 8.00E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01672 Lsi_Chr06 FPKM 1.722115 3.037213 8.032218 7.120458 0.608716 0.83732 0.492679 20.674374 22.337776 22.652109