Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01674 ATGAGTATGTCAAAAGATGGGCAACGACAATCTATGGTGCCAAGCTTCGTGTATTCTGGCAACTGGGGATGTTCCCAAACAGTGGTTAGGCGCTTCCCAATTGAAGCTCCGAAAGAGAAGATAAAGATGTATTCACCGGCCTTCTATGCAGCATGCACAGCAGGGGGCATTATGAGTTGTGGACTCACCCACATGGCTGTCACCCCCCTCGATCTCGTCAAGTGCAATATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGATTTGGAATTCTGCTAAAGGAGCAGGGAGTGAGAGGATTCTTCCGGGGTTGGGTGCCAACGTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTTTATGAGTTCTTCAAGAAGTACTATTCTGATATGGTTGGAGCAGAAAATGCAGTTAAGTACAAAACTTTCATATACCTTGCTGGCTCAGCATCCGCAGAAGTAATTGCCGATATCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGTGTCCAAACTCAACCTGGTTTTGCTCGGGGTTTGTCAGATGGCCTTCCAAAGTTTGTCAAGTCTGAGGGTGCTCCTGGGCTCTACAAAGGTCTGGTTCCTCTGTGGGGACGTCAGATTCCATATACCATGATGAAATTTGCTTCTTTCGAAACAATTGTTGAGATGCTTTACAAGTATGCCATCCCAAGGCCAAAAGAACAGTGTAGCAAATCTCTGCAACTTGGAGTGAGCTTTGCCGGGGGGTATGTTGCTGGCGTCCTCTGTGCTGTGGTTTCACACCCGGCAGACAATCTTGTCTCTTTTCTCAACAATGCCAAGGGTGCAACTGCTGGGGATGCTGTCAAGCAGCTGGGTTTATGGGGTCTCTTCACTCGTGGCCTTCCGCTTCGGATTGTTATGATTGGAACTCTTACCGGGTCTCAATGGGGAATATATGATGCATTCAAAGTTTTCGTTGGACTGCCAACAACTGGTGGCGCTACCCCTGCTCCTGCCGCTAGCAAGTGA 1026 48.73 MSMSKDGQRQSMVPSFVYSGNWGCSQTVVRRFPIEAPKEKIKMYSPAFYAACTAGGIMSCGLTHMAVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGAENAVKYKTFIYLAGSASAEVIADIALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGAPGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPRPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNLVSFLNNAKGATAGDAVKQLGLWGLFTRGLPLRIVMIGTLTGSQWGIYDAFKVFVGLPTTGGATPAPAASK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26967425 26969552 - Lsi06G016740.1 Lsi06g01674 666404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01674 341 PANTHER PHOSPHATE TRANSPORTER 27 340 - -
Lsi06g01674 341 Pfam Mitochondrial carrier protein 50 134 IPR018108 -
Lsi06g01674 341 Pfam Mitochondrial carrier protein 146 232 IPR018108 -
Lsi06g01674 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 144 228 IPR018108 -
Lsi06g01674 341 ProSiteProfiles Solute carrier (Solcar) repeat profile. 47 131 IPR018108 -
Lsi06g01674 341 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 27 340 IPR044677 GO:0005315|GO:1990547
Lsi06g01674 341 Gene3D Mitochondrial carrier domain 47 325 IPR023395 -
Lsi06g01674 341 SUPERFAMILY Mitochondrial carrier 50 320 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01674 Lsi-Chr6:26967425 Lsi09g00822 Lsi-Chr9:9426207 0 dispersed
Lsi06g01674 Lsi-Chr6:26967425 Lsi01g01476 Lsi-Chr1:12824733 4.96E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01674 K15102 - csv:101220423 605.905