Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01676 ATGCTTTCTTCAACAAGGAAGACCATGGCAATGGCTGCTCTTGTTCTTCATCTTTGCATTTACAAGGAGGTCGACTCCTCTCATGATCATCCTGACAAGATTATTAGCCTTCCAGGGCAGCCCCCTGTGGGGTTCCATCAGTTTTCAGGTTATATTCATGTAGATGACCAAAAGCACAGAGCACTGTTCTACTACTTCGTTGAAGCAGAAATTGGCCCTGCTTCTAAGCCTTTGGTTCTCTGGCTGAATGGAGGGCCTGGTTGTTCTTCCCTGGGAGTTGGGGCGTTCTCAGAAAATGGACCTTTTAGGCCAAAGGGGGAGGTTTTAGTGAAAAATGAATACAGCTGGAACCGAGTAAAGGAAAATTCAAATTCGATCATTTCAGTAGCAAACATGTTGTACTTAGAGACACCCGCAGGAGTTGGGTTCTCTTATGCTAATGATACCGCTTCTCATGGGACAATGGATGATGAGGCCACAGCAAAAGACAATCTCATATTCTTGCAAAGGTGGTTCAATCAGTTCCCTCATTACAAGCATAGAGATCTATTTCTAACAGGAGAGAGTTATGCAGGCCATTACATTCCTCAGCTGGCAAGGCTTATGACTGAATTGGACAGGAAGGAGAAGCTATTTAATCTGAAGGGAATTGCTCTAGGGAATCCAGTTTTAGAGTATGCAACAGACTTGAATTCAAGGGCAGAATTCTTTTGGTCACATGGATTAATATCAGACTCAACTTACAGATTGTTCACTGCTGCTTGTAACTACTCCCGATACGTTAGTGAGTACTACAGAGACTCAGTCTCAGGGGTTTGTTTGCGGGTGATGACCCAAGTCAACAGAGAAACCAGTAAATTCGTGGACAAATATGACGTTACTCTTGATGTCTGTATTCCTTCAGTGCTCTCGCAGTCCAAGTATCTAAGCCCACAGGATTACTTAATCTGGCAGCATGTACGAGAGAGGATAGATGTTTGCATTGAAGATGAAACCGTTAAATATCTGAACCGAGAGGATGTGAAAAAGGCTCTTCATGCACGTCTTGTCGGAGTCCACAAGTGGGCTGCTTGCAGCGAAGTTCTGGACTATGAGCTTCTCAACCTGGAAATTCCAACCATCTCCATTGTTGGGTCACTTGTCAAAGCAGGCATACGAATCTTGATTTACAGTGGAGATCAGGATTCAGTAATTCCATTGATGGGTAGTCGCTTGCTGGTTCATAGGTTAGCAACAGAGCTGGGTCTTAACACTAGTGTTCCATACGGTGCTTGGTTCCAGGGAAAGCAGGTCGCAGGTTGGACCCAAGTTTATGGCAATATCCTTTCGTTTGCAACCATTCGAGGTGCCTCTCATGAAGCTCCATTCTCTCAACCTCAACGGTCACTTATATTATTCAAGTCATTTCTGGATAACAGGCCTCCACCCCAAGTTCTGTGA 1440 44.51 MLSSTRKTMAMAALVLHLCIYKEVDSSHDHPDKIISLPGQPPVGFHQFSGYIHVDDQKHRALFYYFVEAEIGPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEVLVKNEYSWNRVKENSNSIISVANMLYLETPAGVGFSYANDTASHGTMDDEATAKDNLIFLQRWFNQFPHYKHRDLFLTGESYAGHYIPQLARLMTELDRKEKLFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYRLFTAACNYSRYVSEYYRDSVSGVCLRVMTQVNRETSKFVDKYDVTLDVCIPSVLSQSKYLSPQDYLIWQHVRERIDVCIEDETVKYLNREDVKKALHARLVGVHKWAACSEVLDYELLNLEIPTISIVGSLVKAGIRILIYSGDQDSVIPLMGSRLLVHRLATELGLNTSVPYGAWFQGKQVAGWTQVYGNILSFATIRGASHEAPFSQPQRSLILFKSFLDNRPPPQVL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26974186 26976630 + Lsi06G016760.1 Lsi06g01676 666406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01676 479 SUPERFAMILY alpha/beta-Hydrolases 35 474 IPR029058 -
Lsi06g01676 479 Pfam Serine carboxypeptidase 39 472 IPR001563 GO:0004185|GO:0006508
Lsi06g01676 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 23 476 IPR001563 GO:0004185|GO:0006508
Lsi06g01676 479 Gene3D - 327 363 - -
Lsi06g01676 479 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 45 23 476 - -
Lsi06g01676 479 ProSitePatterns Serine carboxypeptidases, histidine active site. 442 459 IPR033124 GO:0004185
Lsi06g01676 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Lsi06g01676 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Lsi06g01676 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 442 455 IPR001563 GO:0004185|GO:0006508
Lsi06g01676 479 Gene3D - 374 471 - -
Lsi06g01676 479 Gene3D alpha/beta hydrolase 29 299 IPR029058 -
Lsi06g01676 479 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01676 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - pop:7484878 738.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02001 Lsi-Chr2:25992220 Lsi06g01676 Lsi-Chr6:26974186 6.81E-110 dispersed
Lsi03g01530 Lsi-Chr3:26301827 Lsi06g01676 Lsi-Chr6:26974186 2.24E-110 dispersed
Lsi03g01532 Lsi-Chr3:26317098 Lsi06g01676 Lsi-Chr6:26974186 1.36E-98 dispersed
Lsi03g01660 Lsi-Chr3:27797999 Lsi06g01676 Lsi-Chr6:26974186 9.95E-85 dispersed
Lsi06g01676 Lsi-Chr6:26974186 Lsi07g00380 Lsi-Chr7:4094659 0 dispersed
Lsi06g01676 Lsi-Chr6:26974186 Lsi08g00522 Lsi-Chr8:13171853 3.67E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01676 Lsi_Chr06 FPKM 0.615156 1.10786 0.22789 0.216536 0.22001 0.385702 0.159304 0.0 0.0 0.030478