Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01680 ATGGAAAAACACCATCCCCTTCAACATCAGGATATCAAGGACCTCGACTTGGATCTCGGACCCGACGAGCCTGACCTTGCCCCTCTCCCCCCCACCGTTACTTCCCGGGTACTGCACATGTTGGGAGACATCGCAGCAGGTCCCGCTTACAGGTTTTCCCAATGGCTTGAACTCGTCCGTAAACGTAGCGGCAAACATCGCGCTTCTGGCTTCCACAACCGCCCTCATCCACCTTTTGATATGCCTTTCGGTGCTGAGGAACTTGTCAATGAATCGATAATTCTTCCAGCTCCCGAGCAATCAACTGAAACGAATTTGTGGGATAGACTCGCTAAAGCTTCAATGTTGGATATCGAATCGAGCTCTTTTTCGTGGGATAGGCTTTTGTCACTTCACCGCACCGAACACAGTAGTAGCACTGAACATTCGGAAGATGAGATGAATAAAGCCTTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCACTCTTCAATCAGCTTGGATATGATGATAATCTCCCAAAGGAAGCAGCTGCAGTGATAAAGATATCATCTTCAAGAATGGCCACACAATCTGAACGCCTTGGTTATGAATTTGCTAAGTGGCTCGGGGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCCAGCACGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATATTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTGCATGGATCTCCATTGTTGGAAAGCTCAGGTGCATTTGAATCACGAGAAATGGCTGAAAAATTAGCTGCTGCTATTGGAAGGATCTTATTGTTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCGGCAAATTTGCTCTTGGCTGATAGAATGACATCTGCAAATATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTAAGCGATACAAACCAAAAGTCATTACAACGCTTCAAAAAGAAAGAAGGGCAACTTCAGTGGATAATAGATCAAGTTCTAATTCAGGGTTGGTTTCAGAGGTATCTGAACTTTGTGATATTGTTGAATCCCCAAAATCTAGTAACCTAAGTATAAAAAGTCAAATATCAGATGAAGCAATGTCTTGTGATTTTAATATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCTGCTGGAAAACGTGCTAATGACCAATCTATTTACCCAAAATTAGTTGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATCTGTTACATGACATTACAGGAGGGAAATTAGTGTTCCCTTCATCAACCGATGCCAACTCAACTTGTGGCATGCAGCTTACGGATATGAGTTCTATTGTCCATGAATTTCGATATGGGTTTCGTGCTGCTCTTAGAGACTTGCAAGGATTTCACATATTTTTGCTTTCCCTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATCATAAATAAATTTCCCTTGGGGGAATCCGACAAAGAGGATGCAGGGGTTCCCGAGTCCCATTTGCAGGGTTCTACCACTATTCATTGTTTATCTCCACGTGGTAAGGAACGAGCCTCTAATGATGGTAATGTAGATGTTACAGAGTCAGCTCCAAGATCATCATCGTCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTATACAAGGGAGGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTCCGAGACTTTCATAAATTTGCTAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAATGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGTGATAGTCATGGAGTTGTTGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTGATATCCGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGCGGTGCCTTAGCTGCAAGATCTGTTTACACTCTTCAGCATCTGGGAGTTACTCATATTTTATGTCTCTGCTCAAATGAAATTGGGCAGTCAGATTCTCAGTTCCCTGATCTATTTGAATACAAAAATTTTTCAATAAGTGATGATGAAGACTCGAACATTAGCAGCATCTTTGAAGAAGCTTCTGATTTTGTTGACGACGTTGAAAGAAAGGGTGGGAAGGTCCTGGTTCATTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGTTAAAAGCATGGAATGCCTTAAAACGGGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAACATTATTAGAGTTAGATCGAAAAATACATGGAAAGGTATCTTTGGAGTGGCAATCACGGAAACCAACCATGAAAGTATGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATCTGCAAAAATCACACAGGAAGCTATCATCTGGGAGTGTAGACAGTGCAATGACCATGGAAATACAGAAAGCATTGACAGCTCTAAGAATCAGTCGTGGAGGAAGCGTGAGCCCAACCCAAAGGCAATCTATTCTCATCTTGGATGAATAG 2760 42.28 MEKHHPLQHQDIKDLDLDLGPDEPDLAPLPPTVTSRVLHMLGDIAAGPAYRFSQWLELVRKRSGKHRASGFHNRPHPPFDMPFGAEELVNESIILPAPEQSTETNLWDRLAKASMLDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKAFEVTVNSGGVVFFALFNQLGYDDNLPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSTEWLQIKEAAEKARDIACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSGAFESREMAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMTSANMNAFEEAFDSAIKRYKPKVITTLQKERRATSVDNRSSSNSGLVSEVSELCDIVESPKSSNLSIKSQISDEAMSCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLVFPSSTDANSTCGMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLSLHQKLDNSLRAFMNIINKFPLGESDKEDAGVPESHLQGSTTIHCLSPRGKERASNDGNVDVTESAPRSSSSGNKESSDLSSPLSRDSSQGKLYKGGAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEMLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDDEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRKIHGKVSLEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSILILDE 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26986337 26995553 + Lsi06G016800.1 Lsi06g01680 666410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01680 919 ProSiteProfiles Dual specificity protein phosphatase domain profile. 692 837 IPR020422 GO:0006470|GO:0008138
Lsi06g01680 919 SMART dsp_5 692 834 IPR020422 GO:0006470|GO:0008138
Lsi06g01680 919 CDD DSP 693 830 - -
Lsi06g01680 919 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 4 918 IPR035010 GO:0004721|GO:0009737|GO:0043622
Lsi06g01680 919 Pfam Dual specificity phosphatase, catalytic domain 708 833 IPR000340 GO:0008138|GO:0016311
Lsi06g01680 919 MobiDBLite consensus disorder prediction 1 20 - -
Lsi06g01680 919 Gene3D Protein tyrosine phosphatase superfamily 670 838 IPR029021 -
Lsi06g01680 919 Pfam Actin-fragmin kinase, catalytic 103 416 IPR015275 -
Lsi06g01680 919 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 757 813 IPR000387 GO:0016311|GO:0016791
Lsi06g01680 919 MobiDBLite consensus disorder prediction 531 600 - -
Lsi06g01680 919 MobiDBLite consensus disorder prediction 563 593 - -
Lsi06g01680 919 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 692 836 IPR029021 -
Lsi06g01680 919 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 4 918 - -
Lsi06g01680 919 MobiDBLite consensus disorder prediction 1 26 - -
Lsi06g01680 919 ProSitePatterns Tyrosine specific protein phosphatases active site. 779 789 IPR016130 GO:0016311|GO:0016791
Lsi06g01680 919 Gene3D - 272 522 IPR036940 GO:0016301
Lsi06g01680 919 SUPERFAMILY Protein kinase-like (PK-like) 54 430 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00858 Lsi-Chr4:8372045 Lsi06g01680 Lsi-Chr6:26986337 1.18E-20 dispersed
Lsi06g01680 Lsi-Chr6:26986337 Lsi09g01355 Lsi-Chr9:21512137 7.98E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01680 K14165 - csv:101220184 1653.65