Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01682 | ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCTGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATTGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCGCTAGTTTCAGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACGAGTCAAGTGGCGGACCAGCAGATGCCTGTATATAACCTTCCATCAAAGATACTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGCATGCTGTGGACAAGGAACCTCCACCTACTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAACCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAACGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCACGAAGACATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTTAGGCGCGCCATGAGACAACATGGCAACGTCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTGTATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTCGAAGGTGAAGAGGCTCCTGAGCAGAGGTTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCCCGTCCGGAGAAAGTCTCACCGTGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTATCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGCAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATCCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACTTGGTCGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGGGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAGCCTATGTTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAGAATCCTGCTATTCCAGACCCTGCAGGATTGAATAGAAATATGATGAACGAGGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAGTTGGCTGATAAATCCCTTGCCATCAATGAGGCCGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATACACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATAAGAATCCATCTATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTAGCTTCAATGTCGTCAGCACCCGAGAGTTCTTAG | 2553 | 46.1 | MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEHAVDKEPPPTPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQCMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDPAVVTVNSIRKHAMDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPMLFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLNRNMMNEADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDKNPSIEGEEAKEIKSQAVASMSSAPESS | 850 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 27009010 | 27026500 | - | Lsi06G016820.1 | Lsi06g01682 | 666412 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 381 | 421 | - | - | |
Lsi06g01682 | 850 | Pfam | AUX/IAA family | 708 | 809 | IPR033389 | - | |
Lsi06g01682 | 850 | ProSiteProfiles | B3 DNA-binding domain profile. | 147 | 249 | IPR003340 | GO:0003677 | |
Lsi06g01682 | 850 | SUPERFAMILY | DNA-binding pseudobarrel domain | 143 | 276 | IPR015300 | - | |
Lsi06g01682 | 850 | Gene3D | - | 310 | 380 | - | - | |
Lsi06g01682 | 850 | ProSiteProfiles | PB1 domain profile. | 724 | 808 | IPR000270 | GO:0005515 | |
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 813 | 850 | - | - | |
Lsi06g01682 | 850 | SUPERFAMILY | CAD & PB1 domains | 721 | 801 | - | - | |
Lsi06g01682 | 850 | Pfam | Auxin response factor | 273 | 355 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi06g01682 | 850 | SMART | B3_2 | 147 | 249 | IPR003340 | GO:0003677 | |
Lsi06g01682 | 850 | Pfam | B3 DNA binding domain | 147 | 248 | IPR003340 | GO:0003677 | |
Lsi06g01682 | 850 | Gene3D | - | 720 | 813 | - | - | |
Lsi06g01682 | 850 | CDD | B3_DNA | 145 | 247 | IPR003340 | GO:0003677 | |
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 395 | 421 | - | - | |
Lsi06g01682 | 850 | Gene3D | - | 144 | 249 | IPR015300 | - | |
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 705 | 725 | - | - | |
Lsi06g01682 | 850 | PANTHER | AUXIN RESPONSE FACTOR 2 | 28 | 831 | - | - | |
Lsi06g01682 | 850 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 28 | 831 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi06g01682 | 850 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01682 | Lsi-Chr6:27009010 | Lsi10g01284 | Lsi-Chr10:17084884 | 7.17E-161 | dispersed | |
Lsi10g01262 | Lsi-Chr10:16880026 | Lsi06g01682 | Lsi-Chr6:27009010 | 1.80E-73 | dispersed | |
Lsi11g00812 | Lsi-Chr11:9994471 | Lsi06g01682 | Lsi-Chr6:27009010 | 2.24E-18 | dispersed | |
Lsi06g01682 | Lsi-Chr6:27009010 | Lsi01g00116 | Lsi-Chr1:1225345 | 1.85E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25565 | PF02309 | AUX_IAA | 4.90E-12 | CL0072 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01682 | - | - | bhj:120070853 | 1641.32 |