Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01682 ATGGCCTCCTCCGAGGTTTCGATCAACCCCAATTCCGCCTCCTTCAACGACCATGCTGATTCTACCAAAGACACCTCCGATCCACCCAACGCTCTCTCTGCCAGGGATGCTGATATTGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCGCTAGTTTCAGTTCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACGAGTCAAGTGGCGGACCAGCAGATGCCTGTATATAACCTTCCATCAAAGATACTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAACCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGCATGCTGTGGACAAGGAACCTCCACCTACTCCCCCGCGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAACCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAACGAATGGCGTTTTCGTCATATATTTCGAGGGCAACCACGAAGACATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGCGTTGGTGTTAGGCGCGCCATGAGACAACATGGCAACGTCCCATCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCTATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTGTATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGCGGTTCAAAATGAGATTCGAAGGTGAAGAGGCTCCTGAGCAGAGGTTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCCCGTCCGGAGAAAGTCTCACCGTGGAAAATTGAGCCTGCCCTTGCTCCTCCTGCACTGAACCCCCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTATCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATCGATAGCAATGATCCAGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTACGCCGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTTCGAGCTGGCATGGGAGATCCAGCAGTAGTCACTGTTAATTCAATCAGAAAGCATGCCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACTTGGTCGACTCTAGTCAGAGGGGTCATATTCAGGCTGGTGACTTATCTTATCAAGGGAGGGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCATGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGATGTCAAAGCCTATGTTATTTCAGAACCAAGATATACTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCAATAAGAATCCTGCTATTCCAGACCCTGCAGGATTGAATAGAAATATGATGAACGAGGCAGATGTTATGCATCCTAATATACATCAAATCCATTCAAACGAGTCTGACCTGAAGGCTGAACTATCTAGAGGTTCAAAGTTGGCTGATAAATCCCTTGCCATCAATGAGGCCGATAAGTTGCAGCAACCATGCGCACATAACTCGAAGGACACACACAGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGTGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATACACGGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATAAGAATCCATCTATTGAAGGGGAAGAAGCAAAAGAGATCAAAAGTCAGGCAGTAGCTTCAATGTCGTCAGCACCCGAGAGTTCTTAG 2553 46.1 MASSEVSINPNSASFNDHADSTKDTSDPPNALSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTSQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEHAVDKEPPPTPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQCMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVSTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDSNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDPAVVTVNSIRKHAMDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQRGHIQAGDLSYQGRGNATFNGFGDHSMAHCHRTEQPHGNWLMPPPSSHFDYPVHSTELMSKPMLFQNQDILKPKDGNCKLFGISLNKNPAIPDPAGLNRNMMNEADVMHPNIHQIHSNESDLKAELSRGSKLADKSLAINEADKLQQPCAHNSKDTHSKSQGTSARSCTKVHKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDKNPSIEGEEAKEIKSQAVASMSSAPESS 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27009010 27026500 - Lsi06G016820.1 Lsi06g01682 666412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01682 850 MobiDBLite consensus disorder prediction 381 421 - -
Lsi06g01682 850 Pfam AUX/IAA family 708 809 IPR033389 -
Lsi06g01682 850 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Lsi06g01682 850 SUPERFAMILY DNA-binding pseudobarrel domain 143 276 IPR015300 -
Lsi06g01682 850 Gene3D - 310 380 - -
Lsi06g01682 850 ProSiteProfiles PB1 domain profile. 724 808 IPR000270 GO:0005515
Lsi06g01682 850 MobiDBLite consensus disorder prediction 813 850 - -
Lsi06g01682 850 SUPERFAMILY CAD & PB1 domains 721 801 - -
Lsi06g01682 850 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi06g01682 850 SMART B3_2 147 249 IPR003340 GO:0003677
Lsi06g01682 850 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Lsi06g01682 850 Gene3D - 720 813 - -
Lsi06g01682 850 CDD B3_DNA 145 247 IPR003340 GO:0003677
Lsi06g01682 850 MobiDBLite consensus disorder prediction 1 31 - -
Lsi06g01682 850 MobiDBLite consensus disorder prediction 395 421 - -
Lsi06g01682 850 Gene3D - 144 249 IPR015300 -
Lsi06g01682 850 MobiDBLite consensus disorder prediction 705 725 - -
Lsi06g01682 850 PANTHER AUXIN RESPONSE FACTOR 2 28 831 - -
Lsi06g01682 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 831 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi06g01682 850 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01682 Lsi-Chr6:27009010 Lsi10g01284 Lsi-Chr10:17084884 7.17E-161 dispersed
Lsi10g01262 Lsi-Chr10:16880026 Lsi06g01682 Lsi-Chr6:27009010 1.80E-73 dispersed
Lsi11g00812 Lsi-Chr11:9994471 Lsi06g01682 Lsi-Chr6:27009010 2.24E-18 dispersed
Lsi06g01682 Lsi-Chr6:27009010 Lsi01g00116 Lsi-Chr1:1225345 1.85E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25565 PF02309 AUX_IAA 4.90E-12 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01682 - - bhj:120070853 1641.32