Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01687 ATGACCCAGCCGGTGAAGAAACCCAAAGTGGAGGAACTTTGCTATGCGCAGTCACCTGAAACCGTTACGGCAGAGGTAGATGAATGCAATAGTATCGCCGACGACCAAGAGTCGGCACTCATTGCTCTAGTCGAGCATCGTACTCGTGAAGTCCACCATCTCCAGCAGCGTATTTCCTACTACTCTCGCCAGCTAGAGGAAGCAGAGAAGCGGTTACAGGAATCTGAATCTTTGTTGGCCCGCCTTCGAGGCCCGCGTTATACTTTGCCATTAAGAAGTTCTCAGGATTGTGGATTCAAATGTGTGGAGGCTGAGCCTAGATCAGCCAGTCCTATTCATGCCAATGGAGGTTCTGAAGCAAAACGACTTCTTGGTTCCAGTCATAGCCCTTCAATTCCCAATCGCTCTAATCTTGCCACAACAGGTGAACAAGAAAAACCTTGCATGGTCTCATCTATCGGGAGAGTTGTTGATGATCAAAGTGACAGGAAAAGAAGAAAGTTTGGTAATGCTTCAACCTTTTGTTTAAGTGCTATCTTTTTCCATGCTACTTCATTAGTTTCAGATGATGTACTGTACTACAACTCAGGTCCTCCCATGTTTGCACTCATGATGTCTGCATTGTGTATGTCAGAGCAAAAAGATCACAAGGAATTGATTCCATTAATACGAAGTAGCTCTTCCCCTTTGACTGCCCAACGAGATGCTAGTTATTATTTTCCTAGTCAGCACAAGAGAAAACTGAGAAGCCTTGCTCCATCTCCCGTTAATGACCAACTTTTTGTTACCAGTGCTTTGGATGGAGTCATCAACCTGTGGCAAGTTCAGTCCAAGGAGTCGTTTGCCTCTCTTCTTTGTACTACTGACTGTATGTCTCAAAAGCAGAGGAGATGGCCTGAAGATATAGCATGGCACCCGGCAGGAAACAGCCTATTTTCCGTGTACAGTGCTGATGGTGGAGATTCTCAAATATCGATCTTGAACTTCAATAGGACTAAAGAGAAGGCCAGTGTTACTTTCTTAGAGGATAAGCCTCATGTTAAAGGCATTATCAACGTCATTAGTTTCTTGCCTTGGGAATCTGTCCCATTCGTTACTGGTGGCAGTGACCATGCTGTCGTTCTATGGACTATGAAAGATCAACAGAACACATGGAAACCAGAGTTGTTGCACAGGAACCTGCACTCTTCAGCTGTCATGGGTGTCTCAGGGATGCAGATGAAGCAAATTGTACTTTCTGCAGGTGCAGACAAGAGAATCCTTGGTTTTGATGTTCAAGTAGGAAGTGTACTCTTCAAGCATCAATTAGAAAGTAAATGTATGAGTGTCTTGCCTAATCCACGTGACTTTAACCTGTTCATGGTTCAAACAGGGAGTCCAGAAAAGCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAGCAGTGAATCTCAGTCAGCTCTGATAAATCAGGCATGGTCACCTAATGGTTTACACCTAACATCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGGAGTGCAGTGGATAGCAATGTGGTTGTGATAACATTAAAACCTGATGACAAACCACGAAGACTTAATGCAGCTGCCGCTTGTGACTGGGTAGGGAGGGAAGGTGTAATAACCAAAGCAAGGGTGGTGAAAATTAACAAAGTGGATCCAAAGCGAGGGAAGAGACCCCTTTGTTCCGATGAATCGGAGGAAGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAATATGACATGTCAGCCATGGTTTCTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTGGAAGTGGGAGTAGCAGAAGCCCAGCAGCAGTAGATGCTGCAGATTATTTGCCGGAATCGCAATCGCAATCGCAGTCGCAGCAACCAGCTGATCATGAAGTTCAAGTGAAAAGAGAAATTCGACATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCACGAGTATGGCTAGGCACCTTCGACACTGCTGAGGCTGCGGCCCTTGCTTATGATGAAGCTGCCCTTAGATTCAAAGGAACAAAAGCCAAGCTCAACTTCCCTGAGAGATTCACCACTCCACCTTCCTATGCCTATCATCATCCCACCTTTATCCTCAATCTCCACTCCTCAACTTCTCATCATCAGGATCACAAAAATTAA 2232 44.94 MTQPVKKPKVEELCYAQSPETVTAEVDECNSIADDQESALIALVEHRTREVHHLQQRISYYSRQLEEAEKRLQESESLLARLRGPRYTLPLRSSQDCGFKCVEAEPRSASPIHANGGSEAKRLLGSSHSPSIPNRSNLATTGEQEKPCMVSSIGRVVDDQSDRKRRKFGNASTFCLSAIFFHATSLVSDDVLYYNSGPPMFALMMSALCMSEQKDHKELIPLIRSSSSPLTAQRDASYYFPSQHKRKLRSLAPSPVNDQLFVTSALDGVINLWQVQSKESFASLLCTTDCMSQKQRRWPEDIAWHPAGNSLFSVYSADGGDSQISILNFNRTKEKASVTFLEDKPHVKGIINVISFLPWESVPFVTGGSDHAVVLWTMKDQQNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRILGFDVQVGSVLFKHQLESKCMSVLPNPRDFNLFMVQTGSPEKQLRLFDIRLEQKEVHSFGWKQESSESQSALINQAWSPNGLHLTSGSSDPVIHVFDIRSAVDSNVVVITLKPDDKPRRLNAAAACDWVGREGVITKARVVKINKVDPKRGKRPLCSDESEEENPFPIYSARSEYDMSAMVSALGEVIRSGSGSGSSRSPAAVDAADYLPESQSQSQSQQPADHEVQVKREIRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERFTTPPSYAYHHPTFILNLHSSTSHHQDHKN 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27067740 27076613 + Lsi06G016870.1 Lsi06g01687 666417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01687 743 Gene3D - 457 556 IPR015943 GO:0005515
Lsi06g01687 743 Gene3D - 200 450 IPR015943 GO:0005515
Lsi06g01687 743 SMART rav1_2 654 717 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 MobiDBLite consensus disorder prediction 110 147 - -
Lsi06g01687 743 SUPERFAMILY WD40 repeat-like 239 528 IPR036322 GO:0005515
Lsi06g01687 743 MobiDBLite consensus disorder prediction 122 147 - -
Lsi06g01687 743 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 520 - -
Lsi06g01687 743 Coils Coil 51 78 - -
Lsi06g01687 743 Pfam WD domain, G-beta repeat 494 517 IPR001680 GO:0005515
Lsi06g01687 743 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 6 520 - -
Lsi06g01687 743 CDD AP2 654 712 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 ProSiteProfiles AP2/ERF domain profile. 654 711 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 PRINTS Ethylene responsive element binding protein signature 655 666 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 PRINTS Ethylene responsive element binding protein signature 677 693 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 SMART WD40_4 337 377 IPR001680 GO:0005515
Lsi06g01687 743 SMART WD40_4 472 517 IPR001680 GO:0005515
Lsi06g01687 743 SMART WD40_4 386 424 IPR001680 GO:0005515
Lsi06g01687 743 SMART WD40_4 231 274 IPR001680 GO:0005515
Lsi06g01687 743 Pfam AP2 domain 654 703 IPR001471 GO:0003700|GO:0006355
Lsi06g01687 743 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515
Lsi06g01687 743 Gene3D AP2/ERF domain 653 713 IPR036955 GO:0003700|GO:0006355
Lsi06g01687 743 SUPERFAMILY DNA-binding domain 654 712 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01687 Lsi-Chr6:27067740 Lsi01g01113 Lsi-Chr1:9197984 2.44E-29 dispersed
Lsi02g00529 Lsi-Chr2:4592085 Lsi06g01687 Lsi-Chr6:27067740 5.86E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25566 PF00847 AP2 2.80E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01687 - - csv:101206361 810.061