Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01688 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGAAGCGGCGCACCCCTCCCAGCACCACTGCCCCCTTACTCGCTGCGGCCCAGGGAGTTGGGATTGGGCGGCCTTGAGGACTTGTTTCAGGCTTACGGAATCAGGTACTACACCGCCGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATGAACAGCCTCTCTCACATTTTCCGCTGGGACCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGATCTCGATTCCTCCAGACGCCGTCACCTCTTGTCAAACGACACCACTACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTGTCGGAAGAACCGGTGCAGCAGGAGAAGGAGGCGGTGGGAAGCGGAGGAGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATCAGGAAGAAGCAGCGAAGGAGAAACGGATCAAAAAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAAAACGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGCGCAAGTTACATAAACAAGCCCAAAATGAGACATTACGTGCACTGCTATGCGCTGCACTGTCTGGACGAGGAAGCGTCTAACGCACTGAGGAGCGTTTTCAAAGAGAGGGGCGAAAATGTGGGAGCTTGGCGACAAGCATGCTATAAGCCTCTGGTAGCCATTGCAGCTGCCCAAGGTTGGGACATTGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGCCAACTCTGCCATGCCGAGCGCAACGGTTCCACAGCCTCCACCTCCACCTCCGCTGCACCTCACTTGCCTTTTTAA 1041 55.81 MDPEALSATLFKWDPRGMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDDLDSSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGAWEAVAAAEIRKKQRRRNGSKKKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSTSAAPHLPF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27082938 27085937 - Lsi06G016880.1 Lsi06g01688 666418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01688 346 MobiDBLite consensus disorder prediction 177 213 - -
Lsi06g01688 346 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 228 333 IPR035209 GO:0003677
Lsi06g01688 346 Coils Coil 105 125 - -
Lsi06g01688 346 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Lsi06g01688 346 Gene3D Protein LEAFY 225 339 IPR038276 -
Lsi06g01688 346 PANTHER PROTEIN LEAFY 1 228 IPR002910 GO:0003677|GO:0006355
Lsi06g01688 346 PANTHER PROTEIN LEAFY 228 346 IPR002910 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25567 PF17538 C_LFY_FLO 9.50E-66 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01688 - - cmax:111484867 551.592