Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01689 ATGGGCAATTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAAATTCTTCCCCTTGCATTCCAAAACTGTTATCGAAACGCATGCACGGATTATTAAATTTGGATATGGAAACTACCCAACTCTCATCACCTCTCTAGTATCAACTTATCAAAGTGCCGGTTGCCTTAATCGGGTCCATCAACTTCTTGATCTACTCTACTCTAAGCGTCTTGATTTAGTTGCAATGAACTTACTCGTTGAAAATTTTATGAAAATCGGGGAGTGCAAATTTGCTAAAAAGGTATTTTATAAAATGCCTTACTGTGATGTGGTAACATGGAACTCAATCATTGGGGGTTGTGTGAAGAATGCACAGTATGACGAGGCATTTAGATTCTTTAGACAGATGCTGAACTCAAATATTCAGCCGGATGGATTTACATTTGCTTCTGTATTGAATGCATGTGCTCAGCTCGGAGCTCCAAGTAAGACTCAGTGGGTTCATGCTTTGATGACTCAGAAAAAAATTGAGCTTAATTCTATATTAAGTTGTGCACTCATAGATGCATACTCAAAGTGTGGTAGCATCCAAATTGCGAAGGAAATGTTTAGTTGCGTCCCTCACAATGACATCTCAGTTTGGAATTCGATGATCAAAGGGCTTGCAATTCATGGCCTTGCAATGGATGCATTATCGTTATTTTTTATGATGGAGCGTGAGAATGTTGTGCCTGATGCTGTCACCTTTTTGGGCATTTTAACAGCCTGCAACCATGGTGGTTTAATTGACCAGGGTCGCAGGTATTTTGATTGGATGAAAAGCCGTTATTTAATTCAGCCACAGCTTGAGCATTATGGAGTCATGGTTGATCTCTTTAGCCGAGCTGGGTTTCTGGAGGAGGCCTATTCCCTAATTGTGGCAATGCCAATAGAGCCAGATGTTGTCACATGGAGGACGCTTTTGAGTGGTTGTAGAATTTACAGAAATCAAGAACTCGCAGAAGTTGCTATTGCAAATATGTCTCATTGTAAGAGTGGAGATTACGTGTTATTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAAGCAGTTAGAAAGATGATGAAAATCAATGGGGTTCGTAAGAATTGTGGAAAAAGCTGGATTGAGTTGGGAGGTACCATTTTAAACTTCAAGTCGGGTGATCGATCACATCCGGAAAGCGATGCAATATACAAAGTGTTGTGCAGTTTGATGAAGAGAACTCGGTCAGAGGGATATATGCCTGTGACAGAGTTGGTTTTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATTTCACAGCGAAAAGATGGCATTGGCTTATGCGATCCTGAAAACTAGTCCTGGAGCAAGGATCAGTATATCAAAGAACCTGCGGATTTGTGATGATTGTCATACATGGATAAAACTAGTTTCAAGGGTGCTCTGCAGAGCTATAGTAGTGAGGGATCGGATCCGGTTCCATCAATTTGAAGGTGGCACCAAGTCCATCTTCACAGTCCACAAAAATCGTTCTTGGCCAGCTCATCTGCTTGTCCCAGGAATTTTCTCAACTGCTGGCAATCTTCTTCCTAAACGAATACACTCTTCAACAATACATATTATATTGGGTGTCTCTGCAGAAATGAATAGTCTAAGCTGGGCTATCTTCGTTCCTCTGTTTGCTGCCTTCTTGACCACATCTAATGCAGTCGCGCGGGAAAGGAGTCAACACACTGAACGAATATCAGGCAGTGCTGGTGATGTTTTGGAGGATAATCCTGTGGGAAGGTTGAAGGTGTTTGTCTATGAGCTTCCTAGCAAATACAACAAGAAAATTCTCCAGAAAGACCCTAGATGCCTTAATCACATGTTCGCAGCTGAGATCTTTATGCATCGCTTTCTTTTAACTAGTCCTGTTCGAACCCTTAATCCTGAAGAAGCTGACTGGTTTTATACTCCAGTTTATACAACTTGCGACCTTACTCCAAATGGTCTCCCTTTGCCATTTAAATCCCCTCGAATGATGAGAAGTGCAATACAACTTATTTCTTCAAACTGGCCTTACTGGAACCGGACCGAAGGGGCTGATCACTTTTTTGTTGTACCCCACGATTTTGGAGCTTGCTTCCACTATCAAGAAGAGAAGGCAATTGAAAGAGGAATACTTCCTTTGCTACAACGTGCTACCTTGGTTCAGACTTTTGGACAACGAAATCATGTTTGCTTGAAGGAGGGATCAATTACAATTCCTCCTTATGCCCCTCCTCAGAAAATGCACGCCCACCTCATTCCTGAAAAAACTCCTAGGTCCATCTTTGTTTACTTTCGTGGACTATTCTATGATGTCGGAAATGATCCAGAAGGTGGTTATTACGCAAGAGGCGCAAGAGCTGCAGTGTGGGAGAACTTCAAGGATAATCCTCTTTTTGATATATCAACGGAGCATCCAACTACATACTATGAGGACATGCAGCGAGCTGTGTTTTGTCTTTGCCCGCTTGGATGGGCTCCTTGGAGCCCTAGATTGGTTGAGGCTGTGATATTTGGTTGCATCCCTGTTATCATAGCTGATGACATTGTTCTGCCCTTCGCAGATGCAATTCCTTGGGAAGAAATTGGGGTATTTTTAGATGAGAAAGATGTTGCTAACTTGGACACAATATTAACGTCCATCCCACTTGAAATGATATTGAGAAAGCAGAGACTGTTAGCAAATCCTTCCATGAAACAAGCAATGTTATTTCCACAGCCTGCTCAACCTGGAGATGCTTTTCACCAAGTCCTGAATGGACTTGCCCGTAAGTTGCCTCATGACAGGAGTGTCTACCTTACGGCCGGTGAGAAGATTCTAAATTGGACCGCAGGTCCGGTATCATATGTCCCAAACAAGAGGCCGCAGCGACCTCCATATGCAGCAGTATCAAGTAATCCCATCAAAGGATTTCGAGAAAAGCAGGAAGAACTTCAACTTACATTTCGCCTGCCGTTCAGCTTGCCCAACCTTGAGCTGACATTAACAATGCGACCACCAGCAGACGAAGGTTTCATCAAGGGGATCATAGCTTGA 3069 42.65 MGNYQTLYRVLEACKFFPLHSKTVIETHARIIKFGYGNYPTLITSLVSTYQSAGCLNRVHQLLDLLYSKRLDLVAMNLLVENFMKIGECKFAKKVFYKMPYCDVVTWNSIIGGCVKNAQYDEAFRFFRQMLNSNIQPDGFTFASVLNACAQLGAPSKTQWVHALMTQKKIELNSILSCALIDAYSKCGSIQIAKEMFSCVPHNDISVWNSMIKGLAIHGLAMDALSLFFMMERENVVPDAVTFLGILTACNHGGLIDQGRRYFDWMKSRYLIQPQLEHYGVMVDLFSRAGFLEEAYSLIVAMPIEPDVVTWRTLLSGCRIYRNQELAEVAIANMSHCKSGDYVLLSNIYCSLNRWEHAEAVRKMMKINGVRKNCGKSWIELGGTILNFKSGDRSHPESDAIYKVLCSLMKRTRSEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAILKTSPGARISISKNLRICDDCHTWIKLVSRVLCRAIVVRDRIRFHQFEGGTKSIFTVHKNRSWPAHLLVPGIFSTAGNLLPKRIHSSTIHIILGVSAEMNSLSWAIFVPLFAAFLTTSNAVARERSQHTERISGSAGDVLEDNPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLTSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHAHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFLDEKDVANLDTILTSIPLEMILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVYLTAGEKILNWTAGPVSYVPNKRPQRPPYAAVSSNPIKGFREKQEELQLTFRLPFSLPNLELTLTMRPPADEGFIKGIIA 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27086085 27105714 + Lsi06G016890.1 Lsi06g01689 666419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01689 1022 Pfam E motif 321 380 IPR046848 -
Lsi06g01689 1022 Pfam Exostosin family 597 892 IPR040911 -
Lsi06g01689 1022 Gene3D Tetratricopeptide repeat domain 6 201 IPR011990 GO:0005515
Lsi06g01689 1022 Gene3D Tetratricopeptide repeat domain 202 390 IPR011990 GO:0005515
Lsi06g01689 1022 Pfam PPR repeat family 103 150 IPR002885 -
Lsi06g01689 1022 Pfam PPR repeat family 204 250 IPR002885 -
Lsi06g01689 1022 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED 556 959 - -
Lsi06g01689 1022 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 556 959 IPR004263 GO:0006486|GO:0016757
Lsi06g01689 1022 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Lsi06g01689 1022 TIGRFAM PPR: pentatricopeptide repeat domain 207 240 IPR002885 -
Lsi06g01689 1022 Pfam PPR repeat 179 198 IPR002885 -
Lsi06g01689 1022 Pfam PPR repeat 278 302 IPR002885 -
Lsi06g01689 1022 Pfam E+ motif 388 411 IPR046849 -
Lsi06g01689 1022 Pfam DYW family of nucleic acid deaminases 416 503 IPR032867 GO:0008270
Lsi06g01689 1022 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Lsi06g01689 1022 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01689 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - bhj:120071309 931.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01689 Lsi-Chr6:27086085 Lsi01g00939 Lsi-Chr1:7596616 5.47E-24 dispersed
Lsi10g01229 Lsi-Chr10:16574432 Lsi06g01689 Lsi-Chr6:27086085 5.24E-89 dispersed
Lsi11g00686 Lsi-Chr11:7242777 Lsi06g01689 Lsi-Chr6:27086085 8.95E-18 dispersed
Lsi06g01689 Lsi-Chr6:27086085 Lsi07g00393 Lsi-Chr7:4200295 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g7 . . . Bda15g00701 Bpe12g00454 . . . . . . . . . . . . . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0270 Cone19ag0254 . . . . . . . . . . . Bma08g00284 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01689 . Chy02g02709 Cme02g02119
Vvi17g8 . Blo16g00315 Bda06g00703 . . Bpe13g00160 . Bma12g01101 . . . Cma11g00002 . Car11g00002 . . Cpe04g01642 . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0269 Cone19ag0253 . . . . . . . . Bpe07g00913 . . . . . Cmo11g00002 . . . . . . . . . . . . . . . . . . . . Lsi06g01689 Csa01g00004 Chy02g02709 Cme02g02119
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01689 Lsi_Chr06 FPKM 6.184652 5.633995 5.7062 6.530895 7.062725 7.629695 6.601149 8.457931 8.103288 7.95787