Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00009 ATGGAGAAAAACCCACCCCCAGAAAAGTCTGATAGTTTTTCTAAAAATTTCAATAGAAGGATTGCTAATTTGGGCTCACCTCGTCGGACTCCCGACGCTGCTTCTGATCCTAAATCAGATTCTGAAAAGCTTGCTTCCGATCGAGATGATGATGCTTTCATTGAAGACCCTCTTTCCGAATCTGATACAGCCTTGATTTTCGAAGAGGTTGATCGATTCCTTGGATCTAATCCAATCCATGAAATTCCAAGCTCCGTTCTTTCGTTGTCGAAAATGGTGGACTCCATGATCTCTAGGTATAATTCTAACAAATATCCGGCGAAGCTTGGCAAAGACCCCGACCGGGATTCTTCCTTTTTTGAAGCTTTAGGTCGCATTTCCAAGATTGCTATTAAATTAAGCGAATTCCCTACCAGCACTGCCTCAATTCCTTCTCTCAATCGAACCACCACGGCTCTACAACGAGCGATGTCATTATTGGATGAAGAATTCAATGCCCTTTTGAAAGAATGCAAACATCGGGAGCTTGATTCGAAATCTGACAGGAAAGCGTCAAAGCAATCCTCGTTCAAAACAATAACCGAATCAACAGATCAACAAAACAGCACGGTTCCTGAATCATCCGAGTCTGATTCTGCTAAGGAAGAGATATTCCCCTCTTTCTCGCCGGAAACTGTATCAAACATGAAAAGAATTGCCGGAACAATGATCTCCGCTGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTCCGGCAGAGCTCGTTCAAAGGAATATTGAACAAGCTCGGGTATGAAAGTATTAGCATAGACGAGATTCAGAAAATGCAATGGGAGACTCTTCAATCGGAAATCGACAAATGGATCGCCGTCGTCAAGAAATGCTCAAAGTCTCTGTTCCCAGGCGAGTGGAAGCTTTGTGACTCTGTTTTCACCGATCATCCCTTCATTTCTCATACGCTCTTCAGCAATTTAACAAGAGCAGTAGTCATCAAGCTTCTCAACTTTGCAAACGCCGTCGTTTTGACAAAACGATCAGCGGAGAAGATGTTCAAATTACTTGACATGTACGAAACCATCCGCGATTTAATTCCAGCCATCAATGGTTTCCCTGAAAATTGCAGAACAGAGCTAATTTCCGAAGCGGAAGGGGCAAAAAATGGGATAGGCGAAGCAATAGTCGGCATTTTCTACGACCTAGAGAGCTCAATCAAAAGCGACAACGCCAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTGACGCGCTACATAATGAATTACCTAAAATACGCTTGCGAGTACAAAGAAACCCTAGAACAGGTCTTCGAATTTCTCGACCCTAAAGCCGAAGAAGACCGACCGGCAAGAATGGACGAGAACGACGACGCGTCACCGAGAAAGTCTCAGCTCGCAGTTCAGATCGCAATGGTGATGGATCTGCTCGACGCGAATCTCATAATGAGATCGAAACTATACCGCGACGCTTCTCTTCGGTACATCTTCCTGATGAACAACGGAAGGTACATAGTACAGAAAATCAAAGGCTCAAGCGGAATTACCGAGTTGATGGGCGATCGTTGGTGCCGCAAACGATCGACGAATCTGCGACAATACCACAAAAATTACCAGAGAGAAACATGGAGTAAGGTATTGCAGTGCCTAAGCCACGAAGGATTGCTGGTGAACGGGAAGGTATCGAAACCAATATTGAAGGAGAGATTCAAAAGCTTTAACGCGATGTTCGACGAAATACACAAAACGCAAAGCAGTTGGGTAGTGAGCGACGAGCAGCTTCAATCGGAGCTAAGGATTTCGGTGTCGGCGGTGATGATTCCGGCGTATCGTTCGTTCGTTGGGAGATTCAAGCAGCATTTCGATCCAGGAAGACAATCGGAGAAGTACATAAAGTATCAACCTGAAGACATTGAAGGTTTGATCGATGACCTGTTTGATGGAAATACTGCGTCTATGGGGAGAAGGAGAACGTAG 1995 44.76 MEKNPPPEKSDSFSKNFNRRIANLGSPRRTPDAASDPKSDSEKLASDRDDDAFIEDPLSESDTALIFEEVDRFLGSNPIHEIPSSVLSLSKMVDSMISRYNSNKYPAKLGKDPDRDSSFFEALGRISKIAIKLSEFPTSTASIPSLNRTTTALQRAMSLLDEEFNALLKECKHRELDSKSDRKASKQSSFKTITESTDQQNSTVPESSESDSAKEEIFPSFSPETVSNMKRIAGTMISAGYEKECCMSYSFLRQSSFKGILNKLGYESISIDEIQKMQWETLQSEIDKWIAVVKKCSKSLFPGEWKLCDSVFTDHPFISHTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLIPAINGFPENCRTELISEAEGAKNGIGEAIVGIFYDLESSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFEFLDPKAEEDRPARMDENDDASPRKSQLAVQIAMVMDLLDANLIMRSKLYRDASLRYIFLMNNGRYIVQKIKGSSGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLSHEGLLVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRT 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 125965 127959 - Lsi07G000090.1 Lsi07g00009 666431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00009 664 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 55 662 - -
Lsi07g00009 664 PANTHER EXOCYST COMPLEX PROTEIN EXO70 55 662 IPR004140 GO:0000145|GO:0006887
Lsi07g00009 664 MobiDBLite consensus disorder prediction 33 52 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 1 15 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 177 216 - -
Lsi07g00009 664 Gene3D Exocyst complex component Exo70 102 662 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 189 208 - -
Lsi07g00009 664 SUPERFAMILY Cullin repeat-like 108 653 IPR016159 -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 1 55 - -
Lsi07g00009 664 Pfam Exo70 exocyst complex subunit 288 650 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01250 Lsi-Chr2:16449094 Lsi07g00009 Lsi-Chr7:125965 1.73E-124 dispersed
Lsi07g00009 Lsi-Chr7:125965 Lsi09g00909 Lsi-Chr9:11087301 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00009 K07195 - csv:101220402 1214.91