Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00009 ATGGAGAAAAACCCACCCCCAGAAAAGTCTGATAGTTTTTCTAAAAATTTCAATAGAAGGATTGCTAATTTGGGCTCACCTCGTCGGACTCCCGACGCTGCTTCTGATCCTAAATCAGATTCTGAAAAGCTTGCTTCCGATCGAGATGATGATGCTTTCATTGAAGACCCTCTTTCCGAATCTGATACAGCCTTGATTTTCGAAGAGGTTGATCGATTCCTTGGATCTAATCCAATCCATGAAATTCCAAGCTCCGTTCTTTCGTTGTCGAAAATGGTGGACTCCATGATCTCTAGGTATAATTCTAACAAATATCCGGCGAAGCTTGGCAAAGACCCCGACCGGGATTCTTCCTTTTTTGAAGCTTTAGGTCGCATTTCCAAGATTGCTATTAAATTAAGCGAATTCCCTACCAGCACTGCCTCAATTCCTTCTCTCAATCGAACCACCACGGCTCTACAACGAGCGATGTCATTATTGGATGAAGAATTCAATGCCCTTTTGAAAGAATGCAAACATCGGGAGCTTGATTCGAAATCTGACAGGAAAGCGTCAAAGCAATCCTCGTTCAAAACAATAACCGAATCAACAGATCAACAAAACAGCACGGTTCCTGAATCATCCGAGTCTGATTCTGCTAAGGAAGAGATATTCCCCTCTTTCTCGCCGGAAACTGTATCAAACATGAAAAGAATTGCCGGAACAATGATCTCCGCTGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTCCGGCAGAGCTCGTTCAAAGGAATATTGAACAAGCTCGGGTATGAAAGTATTAGCATAGACGAGATTCAGAAAATGCAATGGGAGACTCTTCAATCGGAAATCGACAAATGGATCGCCGTCGTCAAGAAATGCTCAAAGTCTCTGTTCCCAGGCGAGTGGAAGCTTTGTGACTCTGTTTTCACCGATCATCCCTTCATTTCTCATACGCTCTTCAGCAATTTAACAAGAGCAGTAGTCATCAAGCTTCTCAACTTTGCAAACGCCGTCGTTTTGACAAAACGATCAGCGGAGAAGATGTTCAAATTACTTGACATGTACGAAACCATCCGCGATTTAATTCCAGCCATCAATGGTTTCCCTGAAAATTGCAGAACAGAGCTAATTTCCGAAGCGGAAGGGGCAAAAAATGGGATAGGCGAAGCAATAGTCGGCATTTTCTACGACCTAGAGAGCTCAATCAAAAGCGACAACGCCAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTGACGCGCTACATAATGAATTACCTAAAATACGCTTGCGAGTACAAAGAAACCCTAGAACAGGTCTTCGAATTTCTCGACCCTAAAGCCGAAGAAGACCGACCGGCAAGAATGGACGAGAACGACGACGCGTCACCGAGAAAGTCTCAGCTCGCAGTTCAGATCGCAATGGTGATGGATCTGCTCGACGCGAATCTCATAATGAGATCGAAACTATACCGCGACGCTTCTCTTCGGTACATCTTCCTGATGAACAACGGAAGGTACATAGTACAGAAAATCAAAGGCTCAAGCGGAATTACCGAGTTGATGGGCGATCGTTGGTGCCGCAAACGATCGACGAATCTGCGACAATACCACAAAAATTACCAGAGAGAAACATGGAGTAAGGTATTGCAGTGCCTAAGCCACGAAGGATTGCTGGTGAACGGGAAGGTATCGAAACCAATATTGAAGGAGAGATTCAAAAGCTTTAACGCGATGTTCGACGAAATACACAAAACGCAAAGCAGTTGGGTAGTGAGCGACGAGCAGCTTCAATCGGAGCTAAGGATTTCGGTGTCGGCGGTGATGATTCCGGCGTATCGTTCGTTCGTTGGGAGATTCAAGCAGCATTTCGATCCAGGAAGACAATCGGAGAAGTACATAAAGTATCAACCTGAAGACATTGAAGGTTTGATCGATGACCTGTTTGATGGAAATACTGCGTCTATGGGGAGAAGGAGAACGTAG 1995 44.76 MEKNPPPEKSDSFSKNFNRRIANLGSPRRTPDAASDPKSDSEKLASDRDDDAFIEDPLSESDTALIFEEVDRFLGSNPIHEIPSSVLSLSKMVDSMISRYNSNKYPAKLGKDPDRDSSFFEALGRISKIAIKLSEFPTSTASIPSLNRTTTALQRAMSLLDEEFNALLKECKHRELDSKSDRKASKQSSFKTITESTDQQNSTVPESSESDSAKEEIFPSFSPETVSNMKRIAGTMISAGYEKECCMSYSFLRQSSFKGILNKLGYESISIDEIQKMQWETLQSEIDKWIAVVKKCSKSLFPGEWKLCDSVFTDHPFISHTLFSNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETIRDLIPAINGFPENCRTELISEAEGAKNGIGEAIVGIFYDLESSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFEFLDPKAEEDRPARMDENDDASPRKSQLAVQIAMVMDLLDANLIMRSKLYRDASLRYIFLMNNGRYIVQKIKGSSGITELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLSHEGLLVNGKVSKPILKERFKSFNAMFDEIHKTQSSWVVSDEQLQSELRISVSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRT 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 125965 127959 - Lsi07G000090.1 Lsi07g00009 666431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00009 664 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 55 662 - -
Lsi07g00009 664 PANTHER EXOCYST COMPLEX PROTEIN EXO70 55 662 IPR004140 GO:0000145|GO:0006887
Lsi07g00009 664 MobiDBLite consensus disorder prediction 33 52 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 1 15 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 177 216 - -
Lsi07g00009 664 Gene3D Exocyst complex component Exo70 102 662 - -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 189 208 - -
Lsi07g00009 664 SUPERFAMILY Cullin repeat-like 108 653 IPR016159 -
Lsi07g00009 664 MobiDBLite consensus disorder prediction 1 55 - -
Lsi07g00009 664 Pfam Exo70 exocyst complex subunit 288 650 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00009 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101220402 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01250 Lsi-Chr2:16449094 Lsi07g00009 Lsi-Chr7:125965 1.73E-124 dispersed
Lsi07g00009 Lsi-Chr7:125965 Lsi09g00909 Lsi-Chr9:11087301 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005149 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00009 Lsi_Chr07 FPKM 22.919975 24.985512 33.940311 35.036674 38.361477 41.903645 35.344673 33.9422 33.129715 32.381897