Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00019 | ATGATGGAAAATTTCCCTAATTTTCTCTCAACTTCAGCTTCTTCATCCTCCCTCTCTCTCCATCAAATGTTGTTTTCTCGAGCTTCTGATCTCGGCGGAAGCCATCAAGGAGACCATTTTAGACAGCCACCACCCGTCTCCAGTGGGTTACCGCTGTTTCGTGACGTTTCAACAGACGACATGTCGTTCGATGCGACGAGTAGTGTGAAGGACGACGACCTCGTCGTTCCGATTAGTAAAAGCTTTCATGTTGATGAGTCTCCTAGGAATGGAGTTGGTGGGTTGGGGAAGAAGGAGGCTGTAACGACGACAACGGCGACGGGACGAGGAGATTATGAAAAGAAAACGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTATTATAGATGTACACACCAGAGTTGTAAAGTGAAGAAGCAAGTCCAGAGGCTAACTAGAGATGAAGACAAAAGCTCACCTCTTTATTTTACAAACATAAGCTATTATAGATGTACACACCAGAGTTGTAAAGTGAAGAAGCAAGTCCAGAGGCTAACTAGAGATGAAGGTGTGGTTGTCACAACTTATGAAGGAATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAAATGCAAATTTACACTTCTTATTGA | 744 | 42.2 | MMENFPNFLSTSASSSSLSLHQMLFSRASDLGGSHQGDHFRQPPPVSSGLPLFRDVSTDDMSFDATSSVKDDDLVVPISKSFHVDESPRNGVGGLGKKEAVTTTTATGRGDYEKKTKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQSCKVKKQVQRLTRDEDKSSPLYFTNISYYRCTHQSCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 255094 | 259093 | + | Lsi07G000190.1 | Lsi07g00019 | 666441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00019 | 247 | SUPERFAMILY | WRKY DNA-binding domain | 126 | 185 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | PANTHER | WRKY TRANSCRIPTION FACTOR 75-RELATED | 190 | 244 | - | - | |
Lsi07g00019 | 247 | PANTHER | WRKY TRANSCRIPTION FACTOR 75-RELATED | 109 | 178 | - | - | |
Lsi07g00019 | 247 | Pfam | WRKY DNA -binding domain | 135 | 179 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | Pfam | WRKY DNA -binding domain | 189 | 226 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | SMART | WRKY_cls | 190 | 227 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | SMART | WRKY_cls | 134 | 189 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | Gene3D | WRKY domain | 121 | 186 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | ProSiteProfiles | WRKY domain profile. | 129 | 228 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 190 | 244 | IPR044810 | GO:0003700 | |
Lsi07g00019 | 247 | Gene3D | WRKY domain | 187 | 227 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | SUPERFAMILY | WRKY DNA-binding domain | 189 | 227 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi07g00019 | 247 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 109 | 178 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g02073 | Lsi-Chr5:27631218 | Lsi07g00019 | Lsi-Chr7:255094 | 1.39E-14 | dispersed | |
Lsi07g00019 | Lsi-Chr7:255094 | Lsi07g01483 | Lsi-Chr7:21620276 | 7.75E-49 | dispersed | |
Lsi07g00019 | Lsi-Chr7:255094 | Lsi03g01124 | Lsi-Chr3:21462995 | 1.87E-24 | transposed | |
Lsi07g00019 | Lsi-Chr7:255094 | Lsi11g01628 | Lsi-Chr11:24630520 | 1.43E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25570 | PF03106 | WRKY | 4.30E-20 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00019 | - | - | cmo:103494564 | 288.5 |