Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00019 ATGATGGAAAATTTCCCTAATTTTCTCTCAACTTCAGCTTCTTCATCCTCCCTCTCTCTCCATCAAATGTTGTTTTCTCGAGCTTCTGATCTCGGCGGAAGCCATCAAGGAGACCATTTTAGACAGCCACCACCCGTCTCCAGTGGGTTACCGCTGTTTCGTGACGTTTCAACAGACGACATGTCGTTCGATGCGACGAGTAGTGTGAAGGACGACGACCTCGTCGTTCCGATTAGTAAAAGCTTTCATGTTGATGAGTCTCCTAGGAATGGAGTTGGTGGGTTGGGGAAGAAGGAGGCTGTAACGACGACAACGGCGACGGGACGAGGAGATTATGAAAAGAAAACGAAGACGAGAAGCCGGAGATTTGCTTTTCAAACAAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTATTATAGATGTACACACCAGAGTTGTAAAGTGAAGAAGCAAGTCCAGAGGCTAACTAGAGATGAAGACAAAAGCTCACCTCTTTATTTTACAAACATAAGCTATTATAGATGTACACACCAGAGTTGTAAAGTGAAGAAGCAAGTCCAGAGGCTAACTAGAGATGAAGGTGTGGTTGTCACAACTTATGAAGGAATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAAATGCAAATTTACACTTCTTATTGA 744 42.2 MMENFPNFLSTSASSSSLSLHQMLFSRASDLGGSHQGDHFRQPPPVSSGLPLFRDVSTDDMSFDATSSVKDDDLVVPISKSFHVDESPRNGVGGLGKKEAVTTTTATGRGDYEKKTKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQSCKVKKQVQRLTRDEDKSSPLYFTNISYYRCTHQSCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 255094 259093 + Lsi07G000190.1 Lsi07g00019 666441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00019 247 SUPERFAMILY WRKY DNA-binding domain 126 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 190 244 - -
Lsi07g00019 247 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 109 178 - -
Lsi07g00019 247 Pfam WRKY DNA -binding domain 135 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 Pfam WRKY DNA -binding domain 189 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 SMART WRKY_cls 190 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 SMART WRKY_cls 134 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 Gene3D WRKY domain 121 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 ProSiteProfiles WRKY domain profile. 129 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 190 244 IPR044810 GO:0003700
Lsi07g00019 247 Gene3D WRKY domain 187 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 SUPERFAMILY WRKY DNA-binding domain 189 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi07g00019 247 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 109 178 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02073 Lsi-Chr5:27631218 Lsi07g00019 Lsi-Chr7:255094 1.39E-14 dispersed
Lsi07g00019 Lsi-Chr7:255094 Lsi07g01483 Lsi-Chr7:21620276 7.75E-49 dispersed
Lsi07g00019 Lsi-Chr7:255094 Lsi03g01124 Lsi-Chr3:21462995 1.87E-24 transposed
Lsi07g00019 Lsi-Chr7:255094 Lsi11g01628 Lsi-Chr11:24630520 1.43E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25570 PF03106 WRKY 4.30E-20 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00019 - - cmo:103494564 288.5