Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00044 ATGATAACAGTAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCAATGTGCATCGATGGTACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAAGTCTGGATTGCAGCTGGTGATATAATACTTGTGGGGCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAGCACACGTCTCAACGAGGGTATCGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGATTATCTTGAGTTTGAGGATGAGGATATCGACAAGATTTAG 453 46.14 MITVNMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 499096 501429 + Lsi07G000440.1 Lsi07g00044 666466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00044 150 Pfam Translation initiation factor 1A / IF-1 37 98 IPR006196 GO:0003723|GO:0003743|GO:0006413
Lsi07g00044 150 Hamap Translation initiation factor 1A [eif1a]. 21 115 IPR001253 GO:0003743|GO:0006413
Lsi07g00044 150 MobiDBLite consensus disorder prediction 127 150 - -
Lsi07g00044 150 PANTHER EIF-1A 6 150 IPR001253 GO:0003743|GO:0006413
Lsi07g00044 150 TIGRFAM eIF-1A: translation initiation factor eIF-1A 19 115 IPR001253 GO:0003743|GO:0006413
Lsi07g00044 150 ProSitePatterns Eukaryotic initiation factor 1A signature. 46 68 IPR018104 GO:0003743|GO:0006413
Lsi07g00044 150 CDD S1_IF1A 38 114 IPR001253 GO:0003743|GO:0006413
Lsi07g00044 150 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 6 150 - -
Lsi07g00044 150 MobiDBLite consensus disorder prediction 122 150 - -
Lsi07g00044 150 SUPERFAMILY Nucleic acid-binding proteins 7 149 IPR012340 -
Lsi07g00044 150 ProSiteProfiles S1 domain IF1 type profile. 27 101 IPR006196 GO:0003723|GO:0003743|GO:0006413
Lsi07g00044 150 Gene3D - 7 150 IPR012340 -
Lsi07g00044 150 SMART eIF1neu4 33 115 IPR001253 GO:0003743|GO:0006413
Lsi07g00044 150 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00044 Lsi-Chr7:499096 Lsi11g01391 Lsi-Chr11:22468655 3.54E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00044 K03236 - ini:109155805 265.388