Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00044 | ATGATAACAGTAAACATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGGTGTGAGGCAATGTGCATCGATGGTACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAAGTCTGGATTGCAGCTGGTGATATAATACTTGTGGGGCTTCGCGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCTGAGAGCACACGTCTCAACGAGGGTATCGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGATTATCTTGAGTTTGAGGATGAGGATATCGACAAGATTTAG | 453 | 46.14 | MITVNMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI | 150 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 499096 | 501429 | + | Lsi07G000440.1 | Lsi07g00044 | 666466 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00044 | 150 | Pfam | Translation initiation factor 1A / IF-1 | 37 | 98 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | Hamap | Translation initiation factor 1A [eif1a]. | 21 | 115 | IPR001253 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | MobiDBLite | consensus disorder prediction | 127 | 150 | - | - | |
Lsi07g00044 | 150 | PANTHER | EIF-1A | 6 | 150 | IPR001253 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | TIGRFAM | eIF-1A: translation initiation factor eIF-1A | 19 | 115 | IPR001253 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 46 | 68 | IPR018104 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | CDD | S1_IF1A | 38 | 114 | IPR001253 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE | 6 | 150 | - | - | |
Lsi07g00044 | 150 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
Lsi07g00044 | 150 | SUPERFAMILY | Nucleic acid-binding proteins | 7 | 149 | IPR012340 | - | |
Lsi07g00044 | 150 | ProSiteProfiles | S1 domain IF1 type profile. | 27 | 101 | IPR006196 | GO:0003723|GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | Gene3D | - | 7 | 150 | IPR012340 | - | |
Lsi07g00044 | 150 | SMART | eIF1neu4 | 33 | 115 | IPR001253 | GO:0003743|GO:0006413 | |
Lsi07g00044 | 150 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00044 | Lsi-Chr7:499096 | Lsi11g01391 | Lsi-Chr11:22468655 | 3.54E-89 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00044 | K03236 | - | ini:109155805 | 265.388 |