Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00045 GGAAGCTACGAAAACAATCAGAACAAAAGCAGCTTCCATGGCGGGAACGACCTAAAAGAAGAGAACACACAATCGAAGAAACGCTCAAGTAAAGAGAGCAAGAGAGATTTTCTTAAATCAGCAATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGTGTAATGGGCATCGATGAAGCTGGTCGAGGCCCTGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGCTGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTGAACAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGATCTACACCAAAGTCAACGAGAAGGTTTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAAAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCCGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACAGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGCATACTATAATCAGGTTTTCATTGCACAGGATCCAACAACTAAATGTTGGCTAGAAGATCACAAGCACTCGGTGTTTGGGTTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCAGTTCATATTTCAAAGACGTTGTTGAAGTGGCCCTGGCATTCATAACATTGAAACCTATCTTTCAAAATCCTGTGCCACATGGTTACGCGGAGTCGGATAAAGTGGATGAAGGTGGGGCAACGTCTGGAAGTGGTAAGAAACAATTAAGACTAAGGAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGGCAAAGGACGATGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTT 1122 41.89 GSYENNQNKSSFHGGNDLKEENTQSKKRSSKESKRDFLKSAMSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEIYTKVNEKVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGAYYNQVFIAQDPTTKCWLEDHKHSVFGFPTLVRFSWGTCSSYFKDVVEVALAFITLKPIFQNPVPHGYAESDKVDEGGATSGSGKKQLRLRNVGITTSKRKSEEIESNGKGRCKFFQARKLEQLTHF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 502947 506686 + Lsi07G000450.1 Lsi07g00045 666467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00045 374 CDD RNase_HII_eukaryota_like 58 292 - -
Lsi07g00045 374 Gene3D - 25 235 IPR036397 GO:0003676
Lsi07g00045 374 MobiDBLite consensus disorder prediction 1 36 - -
Lsi07g00045 374 MobiDBLite consensus disorder prediction 14 36 - -
Lsi07g00045 374 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 55 295 IPR024567 GO:0004523
Lsi07g00045 374 TIGRFAM TIGR00729: ribonuclease HII 57 288 IPR004649 GO:0004523|GO:0016070
Lsi07g00045 374 PANTHER RIBONUCLEASE H2 SUBUNIT A 298 373 IPR001352 GO:0003723|GO:0004523
Lsi07g00045 374 PANTHER RIBONUCLEASE H2 SUBUNIT A 47 297 IPR001352 GO:0003723|GO:0004523
Lsi07g00045 374 Gene3D Ribonuclease hii. Domain 2 236 293 IPR023160 GO:0004523
Lsi07g00045 374 PANTHER RIBONUCLEASE 298 373 - -
Lsi07g00045 374 PANTHER RIBONUCLEASE 47 297 - -
Lsi07g00045 374 SUPERFAMILY Ribonuclease H-like 56 291 IPR012337 -
Lsi07g00045 374 Pfam Ribonuclease HII 58 285 IPR024567 GO:0004523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00045 K10743 - csv:101210143 543.502